Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.0 | 59.78 |
| Zm00001d019616_P001 | Maize | cytosol | 13.27 | 56.59 |
| Zm00001d015453_P001 | Maize | cytosol | 13.27 | 56.59 |
| KRH52597 | Soybean | nucleus | 55.45 | 56.38 |
| Zm00001d013776_P001 | Maize | cytosol | 13.09 | 55.81 |
| KRH04957 | Soybean | nucleus | 53.82 | 55.64 |
| KRH16134 | Soybean | nucleus | 54.55 | 54.05 |
| CDX97032 | Canola | plastid | 32.55 | 53.43 |
| CDY71882 | Canola | plastid | 33.45 | 52.57 |
| VIT_07s0031g00400.t01 | Wine grape | cytoskeleton, cytosol, nucleus | 9.64 | 51.96 |
| CDX85750 | Canola | nucleus | 36.18 | 51.55 |
| KRH61936 | Soybean | nucleus | 52.18 | 51.53 |
| PGSC0003DMT400067670 | Potato | nucleus | 48.73 | 50.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.73 | 50.67 |
| Solyc08g006460.2.1 | Tomato | nucleus | 48.36 | 50.09 |
| CDY68658 | Canola | nucleus | 41.09 | 48.19 |
| CDX95473 | Canola | nucleus | 40.55 | 48.06 |
| Solyc12g096420.1.1 | Tomato | nucleus | 47.82 | 47.73 |
| AT5G24870.2 | Thale cress | nucleus | 45.09 | 47.69 |
| PGSC0003DMT400075959 | Potato | nucleus | 47.09 | 47.52 |
| CDX88140 | Canola | nucleus | 41.45 | 47.3 |
| CDX78393 | Canola | nucleus | 42.36 | 47.17 |
| Bra006070.1-P | Field mustard | nucleus | 42.18 | 46.87 |
| CDY40109 | Canola | nucleus | 15.64 | 46.24 |
| CDX97044 | Canola | nucleus | 42.73 | 46.08 |
| CDX70363 | Canola | nucleus | 40.18 | 45.47 |
| VIT_11s0118g00640.t01 | Wine grape | nucleus | 9.82 | 45.38 |
| AT5G10650.2 | Thale cress | nucleus | 43.27 | 45.33 |
| Bra009015.1-P | Field mustard | plastid | 43.27 | 44.65 |
| CDX69813 | Canola | mitochondrion | 43.09 | 44.47 |
| VIT_07s0031g00380.t01 | Wine grape | cytosol | 5.64 | 44.29 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 5.64 | 40.79 |
| VIT_07s0031g00370.t01 | Wine grape | mitochondrion | 10.55 | 40.0 |
| Bra009800.1-P | Field mustard | nucleus | 29.82 | 40.0 |
| Bra024009.1-P | Field mustard | nucleus | 11.82 | 37.14 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 36.91 | 35.12 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 32.55 | 34.82 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 36.91 | 34.82 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 37.09 | 34.81 |
| Os06t0695600-01 | Rice | nucleus | 36.55 | 34.72 |
| CDY13429 | Canola | cytosol | 16.18 | 34.5 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 35.27 | 34.4 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 35.82 | 34.38 |
| KXG20741 | Sorghum | nucleus | 36.0 | 33.56 |
| EES04530 | Sorghum | nucleus | 31.27 | 33.2 |
| VIT_07s0031g00440.t01 | Wine grape | nucleus | 13.27 | 33.18 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 36.36 | 33.17 |
| Zm00001d015289_P001 | Maize | nucleus | 33.64 | 32.69 |
| Zm00001d014609_P002 | Maize | nucleus | 34.73 | 32.65 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 33.82 | 32.01 |
| Os02t0150700-01 | Rice | extracellular | 36.0 | 30.89 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 36.36 | 28.78 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 18.73 | 27.47 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 18.55 | 27.35 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 18.18 | 27.1 |
| Zm00001d024406_P002 | Maize | nucleus | 17.45 | 26.82 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 18.0 | 26.61 |
| OQU80147 | Sorghum | nucleus | 17.27 | 26.54 |
| EES12797 | Sorghum | nucleus | 18.0 | 26.47 |
| Os08t0241400-00 | Rice | nucleus | 17.64 | 25.73 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 16.91 | 25.07 |
| Zm00001d026248_P001 | Maize | nucleus | 16.91 | 24.47 |
| VIT_07s0031g00390.t01 | Wine grape | nucleus | 10.55 | 23.77 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 17.09 | 23.68 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 8.91 | 23.67 |
| Os04t0603200-01 | Rice | nucleus | 14.0 | 23.4 |
| CDY63645 | Canola | nucleus | 19.45 | 23.16 |
| Bra024007.1-P | Field mustard | nucleus | 19.64 | 23.13 |
| VIT_06s0004g01930.t01 | Wine grape | nucleus | 10.55 | 23.02 |
| CDY13433 | Canola | nucleus | 19.45 | 22.96 |
| AT4G31450.2 | Thale cress | nucleus | 20.0 | 22.13 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 9.82 | 21.86 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 13.82 | 21.65 |
| VIT_12s0028g01220.t01 | Wine grape | nucleus | 7.45 | 18.72 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 24.36 | 18.26 |
| VIT_08s0040g02160.t01 | Wine grape | nucleus | 17.82 | 17.95 |
| VIT_10s0042g00580.t01 | Wine grape | nucleus | 9.27 | 16.56 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 22.0 | 16.48 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 16.91 | 16.46 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 15.64 | 15.99 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 10.55 | 14.76 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 10.73 | 14.01 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 11.64 | 14.0 |
Protein Annotations
| EntrezGene:100245643 | wikigene:100245643 | Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CCB46640 | ProteinID:CCB46640.1 |
| UniProt:F6H3A3 | EMBL:FN595231 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100245643 | wikigene:LOC100245643 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | SMART:SM00184 | SUPFAM:SSF57850 |
| TIGR:TC56658 | UniParc:UPI0001983017 | ArrayExpress:VIT_04s0008g02390 | EnsemblPlantsGene:VIT_04s0008g02390 | EnsemblPlants:VIT_04s0008g02390.t01 | unigene:Vvi.12001 |
| RefSeq:XP_002280551 | RefSeq:XP_002280551.1 | RefSeq:XP_010648413.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
No Description!
Coordinates
chr4:+:1970602..1975816
Molecular Weight (calculated)
60017.2 Da
IEP (calculated)
8.029
GRAVY (calculated)
-0.666
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYSGKRAI NELVVSRKGS GLRPGVILRD TANNRDRNAQ FCNRLGCRGR LNSMKGTQLG SLEKPKSSRP SSFTSSSGKE IIGSSSSTGP SVRKSLQTPR
101: KKLSAHLETD SSETSSVPDE SEVLELIPPP GKIQRGHHPK ADDTESSEIT PMEVGSSSIA SNTRPRRNFH QKSGFTNQAT LMGSSVALAS KTAGQVARHG
201: ANASRYGLRN LRCNSISDAM PSCSSSESNL TRKKDIGKKR LSEIESSSSA RGKKSGGPSS EYGRNSISSY GVSISDSRRS RNWTPSRDNG VASVRTRRSI
301: NGNTSRPSSS NQGIRNNLLP TEPSITIPQM PQPEISIGAN DPSLSHQFSI GSPSSFLNSY SQSDSSSENL HSIMPISPTE VGISRSSMNR DSLRRYNMDG
401: IAEVLLALER IEQDEELTYE QLLVLETNLF LGGLSFHDQH REMRLDIDNM SYEELLALEE KMGTVSTALT EEALSKCLER SIYHTLPTEP GTMDCAGDGD
501: DVKCSICQEE YMVGDEVGKL QCEHGYHVAC IHQWLRLKNW CPVCKASAAL
101: KKLSAHLETD SSETSSVPDE SEVLELIPPP GKIQRGHHPK ADDTESSEIT PMEVGSSSIA SNTRPRRNFH QKSGFTNQAT LMGSSVALAS KTAGQVARHG
201: ANASRYGLRN LRCNSISDAM PSCSSSESNL TRKKDIGKKR LSEIESSSSA RGKKSGGPSS EYGRNSISSY GVSISDSRRS RNWTPSRDNG VASVRTRRSI
301: NGNTSRPSSS NQGIRNNLLP TEPSITIPQM PQPEISIGAN DPSLSHQFSI GSPSSFLNSY SQSDSSSENL HSIMPISPTE VGISRSSMNR DSLRRYNMDG
401: IAEVLLALER IEQDEELTYE QLLVLETNLF LGGLSFHDQH REMRLDIDNM SYEELLALEE KMGTVSTALT EEALSKCLER SIYHTLPTEP GTMDCAGDGD
501: DVKCSICQEE YMVGDEVGKL QCEHGYHVAC IHQWLRLKNW CPVCKASAAL
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.