Factsheet for TraesCS6D01G111500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G121400.2	Wheat	nucleus	93.37	96.57
TraesCS6B01G149700.2	Wheat	nucleus	87.73	93.79
HORVU3Hr1G054920.1	Barley	cytosol	13.93	91.3
HORVU6Hr1G022370.10	Barley	mitochondrion	87.4	75.83
Zm00001d019616_P001	Maize	cytosol	14.1	65.89
Zm00001d015453_P001	Maize	cytosol	14.1	65.89
Zm00001d013776_P001	Maize	cytosol	14.1	65.89
EES04530	Sorghum	nucleus	51.08	59.46
Os02t0150700-01	Rice	extracellular	60.7	57.1
Zm00001d015289_P001	Maize	nucleus	53.07	56.54
TraesCS7D01G420400.1	Wheat	nucleus	47.76	50.26
CDX97032	Canola	plastid	23.38	42.09
CDY71882	Canola	plastid	24.05	41.43
GSMUA_Achr3P05160_001	Banana	nucleus	40.3	41.26
GSMUA_Achr6P03840_001	Banana	nucleus	23.55	38.27
CDX85750	Canola	nucleus	23.71	37.05
VIT_04s0008g02390.t01	Wine grape	nucleus	33.17	36.36
CDX95473	Canola	nucleus	26.87	34.91
KRH04957	Soybean	nucleus	30.18	34.21
AT5G24870.2	Thale cress	nucleus	29.02	33.65
CDX88140	Canola	nucleus	26.53	33.2
KRH16134	Soybean	nucleus	30.51	33.15
CDY68658	Canola	nucleus	25.7	33.05
Bra006070.1-P	Field mustard	nucleus	27.03	32.93
KRH52597	Soybean	nucleus	29.52	32.9
CDX78393	Canola	nucleus	26.87	32.79
CDX97044	Canola	nucleus	27.36	32.35
CDX70363	Canola	nucleus	26.04	32.3
TraesCS3D01G260700.1	Wheat	nucleus	10.61	32.0
Bra024009.1-P	Field mustard	nucleus	9.29	32.0
PGSC0003DMT400067670	Potato	nucleus	27.86	31.82
CDY40109	Canola	nucleus	9.78	31.72
Solyc08g006460.2.1	Tomato	nucleus	27.69	31.45
CDX69813	Canola	mitochondrion	27.36	30.96
GSMUA_Achr10P...	Banana	nucleus	25.87	30.83
Bra009015.1-P	Field mustard	plastid	27.2	30.77
AT5G10650.2	Thale cress	nucleus	26.37	30.29
Solyc12g096420.1.1	Tomato	nucleus	27.2	29.76
PGSC0003DMT400075959	Potato	nucleus	26.87	29.72
CDY13429	Canola	cytosol	12.6	29.46
KRH61936	Soybean	nucleus	26.04	28.19
TraesCS5D01G286700.1	Wheat	nucleus	5.14	26.27
Bra009800.1-P	Field mustard	nucleus	17.58	25.85
TraesCS2D01G432800.1	Wheat	nucleus	15.92	25.81
GSMUA_Achr7P15850_001	Banana	nucleus	27.2	25.23
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	6.63	23.39
TraesCS1D01G380000.2	Wheat	nucleus	13.1	22.83
TraesCS7D01G049800.1	Wheat	nucleus	8.46	20.32
CDY63645	Canola	nucleus	14.43	18.83
Bra024007.1-P	Field mustard	nucleus	14.43	18.63
CDY13433	Canola	nucleus	14.26	18.45
AT4G31450.2	Thale cress	nucleus	15.09	18.31
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	8.62	17.33
TraesCS2D01G397800.1	Wheat	cytosol	7.3	17.12
TraesCS2D01G022900.1	Wheat	nucleus	19.9	17.12
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	9.62	17.06
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	7.63	17.04
TraesCS2D01G516000.1	Wheat	nucleus	18.74	16.89
TraesCS3D01G244600.1	Wheat	nucleus	13.76	15.72
TraesCS3D01G105300.1	Wheat	cytosol	13.1	15.25
TraesCS1D01G111500.1	Wheat	nucleus	13.43	15.11
TraesCS1D01G405800.9	Wheat	cytosol	13.1	15.08

Protein Annotations

EnsemblPlants:TraesCS6D01G111500.2	EnsemblPlantsGene:TraesCS6D01G111500	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF60	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6D:+:78080568..78083384

Molecular Weight (calculated)

67339.0 Da

IEP (calculated)

9.621

GRAVY (calculated)

-0.735

Length

603 amino acids

Sequence
(BLAST)

001: MEEYLNRSKA AIGFLRRGSG INRSPEETTS QNTDVPGSTS RVNPMKTRLA DNQERPRYLH GSYKYASSNV MSGSSSKFPK NFPLRKFGEE KRRQTKLEGA
101: DVAESSRRKS DAGCLDGSKK TIVENQSSDA PQTETEGLTA KDDELIAPDP EVSHSAGSSG MHAHTAESLV RSASLSSKTH RQKDKELNLG TARYSCSSSF
201: SNQPSIPRIP IAGAKPSYSL VSGEQRRGPR GLKNLGCTSV SDVLPSGCWS DSVRTRSFDA MRKRTSDGES SSRSRVISDP SSLGHSHTIY PSISGPRIRT
301: TEESVRQQTL RSRSRNIQDS AVSVRTRRTS PRDTRFRMSE EREDALLHLN ESTARNQQSV GADFSVEEDS SESSIRPVSV ELPHAIYSST RQGSSTRTAR
401: RTSSSRFEQS PPQTFRSLAR ERGGHRRINM EGIAEVLLVL ERIEQEAGLT YEQLRVLETN LLLGAFASHD QHSDMRMDID NMSYEVLFLS RLVLTKGIHS
501: LQKRVSLELL ALEERIGYVS TALSEEQFAK CIRRRLYRPV AAKGNRSVID DIKCSICQEE FVKGEEVGRL RCEHQYHVCC IRQWLLQKNW CPVCKAPALP
601: SLN

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.