Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G260500.1 | Wheat | nucleus | 98.0 | 56.81 |
| TraesCS3B01G293600.1 | Wheat | nucleus | 96.0 | 55.98 |
| HORVU3Hr1G064370.1 | Barley | plastid | 96.5 | 50.13 |
| OQU87370 | Sorghum | nucleus | 85.0 | 48.71 |
| Zm00001d011636_P001 | Maize | nucleus | 79.0 | 46.75 |
| Zm00001d043784_P002 | Maize | nucleus | 80.5 | 46.53 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 66.0 | 39.52 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 63.5 | 37.35 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 60.0 | 34.68 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 63.0 | 33.16 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 55.0 | 30.56 |
| VIT_17s0000g03210.t01 | Wine grape | nucleus | 52.0 | 28.03 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 16.0 | 27.12 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 41.0 | 26.89 |
| KRH48568 | Soybean | nucleus | 47.5 | 26.84 |
| VIT_01s0011g04080.t01 | Wine grape | nucleus | 45.5 | 25.93 |
| KRH39137 | Soybean | nucleus | 47.5 | 25.75 |
| PGSC0003DMT400078539 | Potato | plastid | 32.0 | 25.7 |
| Solyc03g118840.2.1 | Tomato | nucleus | 48.5 | 25.06 |
| PGSC0003DMT400014732 | Potato | nucleus | 48.0 | 24.74 |
| KRH41763 | Soybean | nucleus | 46.5 | 24.67 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 20.0 | 23.39 |
| CDX73013 | Canola | plastid | 41.5 | 23.38 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 42.5 | 23.16 |
| CDY60141 | Canola | plastid | 41.0 | 22.97 |
| Bra015967.1-P | Field mustard | nucleus | 41.0 | 22.97 |
| AT4G00070.1 | Thale cress | nucleus | 20.5 | 22.91 |
| Bra016574.1-P | Field mustard | nucleus | 41.0 | 22.91 |
| CDX83878 | Canola | nucleus | 40.5 | 22.69 |
| CDX96741 | Canola | nucleus | 41.0 | 22.53 |
| Bra003830.1-P | Field mustard | nucleus, plastid | 37.5 | 22.12 |
| KRH60461 | Soybean | nucleus | 47.5 | 22.04 |
| AT1G17970.1 | Thale cress | nucleus | 39.5 | 21.47 |
| CDY11092 | Canola | cytosol, plastid | 37.0 | 21.26 |
| CDX68213 | Canola | nucleus, plastid | 37.0 | 21.2 |
| AT1G36950.1 | Thale cress | cytosol | 20.0 | 17.7 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 31.0 | 16.67 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 18.0 | 16.36 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 21.0 | 16.34 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 20.0 | 15.94 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 21.0 | 15.56 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 20.5 | 13.67 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 22.0 | 12.94 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 30.0 | 11.36 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 29.5 | 11.26 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 28.5 | 10.63 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 32.0 | 10.61 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 26.0 | 10.04 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 28.5 | 9.95 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 33.0 | 9.42 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 31.0 | 9.27 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G260700.1 | EnsemblPlantsGene:TraesCS3D01G260700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF67 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:363051673..363054204
Molecular Weight (calculated)
23099.8 Da
IEP (calculated)
7.435
GRAVY (calculated)
-0.733
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGRGRGGDS ERPHRERPCL SRRASMQEQM SSSFMESPPP PPLHHLDGPF FGADLLPSAR LRRMRGYRPS PGGLEEEIMM FQTRVLLGGM NMYDRYQDWR
101: LDVDNMTYEE LLELGERIGH VNTGLREDEI IRNLRKVKPD SSFRFPTEVE KKCSICQEEF EANDEMGRLG CGHSYHVYCI KQWLSQKNVC PVCKTAVTKT
101: LDVDNMTYEE LLELGERIGH VNTGLREDEI IRNLRKVKPD SSFRFPTEVE KKCSICQEEF EANDEMGRLG CGHSYHVYCI KQWLSQKNVC PVCKTAVTKT
001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS
Arabidopsis Description
Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.