Factsheet for GSMUA_Achr4P11130_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21480_001	Banana	plastid	77.84	76.47
GSMUA_Achr3P29390_001	Banana	golgi, plastid	76.05	66.84
TraesCS3D01G260700.1	Wheat	nucleus	39.52	66.0
TraesCS3A01G260500.1	Wheat	nucleus	61.98	60.0
Zm00001d011636_P001	Maize	nucleus	60.18	59.47
TraesCS3B01G293600.1	Wheat	nucleus	60.18	58.6
OQU87370	Sorghum	nucleus	61.08	58.45
Zm00001d043784_P002	Maize	nucleus	58.38	56.36
HORVU3Hr1G064370.1	Barley	plastid	59.88	51.95
TraesCS1D01G380000.2	Wheat	nucleus	48.5	46.82
TraesCS1A01G373200.1	Wheat	nucleus	48.5	46.42
Os05t0550000-00	Rice	nucleus	49.7	45.6
GSMUA_Achr4P06090_001	Banana	cytosol	20.06	45.58
TraesCS1B01G393400.2	Wheat	nucleus	47.31	45.4
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.9	45.21
GSMUA_Achr1P23200_001	Banana	nucleus	47.9	44.44
Zm00001d038909_P001	Maize	cytosol, mitochondrion	49.7	43.23
GSMUA_AchrUn_...	Banana	nucleus	14.07	41.96
HORVU1Hr1G082970.1	Barley	plastid	45.21	40.05
VIT_17s0000g03210.t01	Wine grape	nucleus	43.71	39.35
PGSC0003DMT400078539	Potato	plastid	27.54	36.95
GSMUA_Achr4P03550_001	Banana	mitochondrion	6.59	36.67
KRH48568	Soybean	nucleus	38.32	36.16
KRH39137	Soybean	nucleus	38.62	34.96
Bra003830.1-P	Field mustard	nucleus, plastid	35.33	34.81
KRH41763	Soybean	nucleus	39.22	34.75
Solyc03g118840.2.1	Tomato	nucleus	39.82	34.37
CDX73013	Canola	plastid	36.23	34.08
CDX68213	Canola	nucleus, plastid	35.33	33.81
Solyc12g040390.1.1	Tomato	nucleus, plastid	30.84	33.77
PGSC0003DMT400014732	Potato	nucleus	39.22	33.76
VIT_01s0011g04080.t01	Wine grape	nucleus	35.33	33.62
Bra015967.1-P	Field mustard	nucleus	35.93	33.61
CDY60141	Canola	plastid	35.93	33.61
CDX96741	Canola	nucleus	35.93	32.97
Bra016574.1-P	Field mustard	nucleus	35.03	32.68
AT1G73760.1	Thale cress	nucleus, plastid	35.63	32.43
AT1G17970.1	Thale cress	nucleus	35.03	31.79
CDY11092	Canola	cytosol, plastid	32.93	31.61
CDX83878	Canola	nucleus	33.53	31.37
KRH60461	Soybean	nucleus	38.92	30.16
Solyc05g008840.1.1	Tomato	nucleus, plastid	19.76	30.0
GSMUA_AchrUn_...	Banana	nucleus	16.47	24.44
AT4G00070.1	Thale cress	nucleus	12.57	23.46
GSMUA_Achr4P13930_001	Banana	nucleus	14.37	19.35
GSMUA_Achr8P31290_001	Banana	nucleus	14.07	18.58
GSMUA_Achr6P03840_001	Banana	nucleus	20.36	18.33
GSMUA_Achr4P12850_001	Banana	nucleus	23.05	16.89
AT1G36950.1	Thale cress	cytosol	10.78	15.93
GSMUA_Achr3P13740_001	Banana	nucleus	22.75	15.51
GSMUA_Achr10P...	Banana	nucleus	23.05	15.22
GSMUA_Achr4P04290_001	Banana	nucleus	9.88	14.86
GSMUA_Achr3P26700_001	Banana	nucleus	12.57	14.38
GSMUA_Achr4P05140_001	Banana	nucleus	12.57	14.19
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	21.56	14.06
GSMUA_Achr9P24150_001	Banana	nucleus	11.98	13.29
GSMUA_Achr4P03540_001	Banana	nucleus	7.78	13.2
GSMUA_Achr1P23500_001	Banana	nucleus	20.06	13.04
GSMUA_Achr4P30500_001	Banana	nucleus	13.17	12.98
GSMUA_Achr9P22530_001	Banana	nucleus	24.25	12.58
GSMUA_Achr7P15850_001	Banana	nucleus	24.25	12.46
GSMUA_Achr9P11290_001	Banana	nucleus	25.15	12.05
GSMUA_Achr4P04180_001	Banana	mitochondrion, nucleus, peroxisome, plastid	10.78	11.73
GSMUA_Achr3P05160_001	Banana	nucleus	20.36	11.54
GSMUA_Achr8P15680_001	Banana	nucleus	24.55	11.39
GSMUA_Achr5P08460_001	Banana	nucleus	19.16	11.15
GSMUA_Achr4P06080_001	Banana	nucleus	12.57	9.07

Protein Annotations

EnsemblPlants:GSMUA_Achr4P11130_001	EnsemblPlants:GSMUA_Achr4T11130_001	EnsemblPlantsGene:GSMUA_Achr4G11130_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF63	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002962CFA	UniProt:M0SMX8	MapMan:35.1

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G11130_001]

Coordinates

chr4:-:8000688..8004561

Molecular Weight (calculated)

37069.3 Da

IEP (calculated)

10.062

GRAVY (calculated)

-0.636

Length

334 amino acids

Sequence
(BLAST)

001: MASADGRGLR RFLFRSSSSS RPHAAADRNP LIGPPPHPPP PPPRPRPSSP GRKKGLAAAA FRGLGCASAA ASQAYAPAAA AVRSSADWQG KRPRRRRAKK
101: KKKEGRGAVG GDVWCAPGMP FAAEASVDCV MAHQPMVGRG RFDAAERIHR EVRPYIPRRV SHQEQISSAT DSPSNLDTPF YGPGLLPLGH LRHLRGYHRT
201: PGGLEEIMMF QTRVLLRGGM EVYDQFRDWR LDVDNMSYEE LLELGDRIGH VNAGLREEEI ARSLRKTKHS VFDASANHFS PEVEWKCSIC QEEYEGNDET
301: GRLQCGHSYH MHCIKQWLLL KNACPVCKTP VLKT

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.