Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P06090_001 | Banana | cytosol | 26.75 | 82.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.84 | 48.21 |
| GSMUA_Achr9P22530_001 | Banana | nucleus | 67.32 | 47.67 |
| GSMUA_Achr4P03550_001 | Banana | mitochondrion | 3.73 | 28.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.38 | 27.11 |
| GSMUA_Achr4P11130_001 | Banana | nucleus, plastid | 16.89 | 23.05 |
| GSMUA_Achr9P11290_001 | Banana | nucleus | 35.09 | 22.96 |
| GSMUA_Achr9P21480_001 | Banana | plastid | 16.89 | 22.65 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 18.42 | 22.64 |
| EES10483 | Sorghum | nucleus | 34.43 | 22.56 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 35.96 | 22.34 |
| Zm00001d004300_P003 | Maize | nucleus | 33.99 | 22.33 |
| Zm00001d025027_P002 | Maize | nucleus | 32.89 | 21.55 |
| GSMUA_Achr8P15680_001 | Banana | nucleus | 33.55 | 21.25 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 31.58 | 20.4 |
| TraesCS2B01G030700.1 | Wheat | nucleus | 30.92 | 20.11 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 30.7 | 19.97 |
| TraesCS2A01G022100.1 | Wheat | nucleus | 30.48 | 19.83 |
| GSMUA_Achr3P29390_001 | Banana | golgi, plastid | 16.23 | 19.47 |
| Os04t0185500-01 | Rice | nucleus | 30.26 | 19.46 |
| GSMUA_Achr3P13740_001 | Banana | nucleus | 20.39 | 18.98 |
| GSMUA_Achr1P23200_001 | Banana | nucleus | 14.69 | 18.61 |
| KRH50319 | Soybean | nucleus | 29.17 | 18.6 |
| GSMUA_Achr4P13930_001 | Banana | nucleus | 9.87 | 18.15 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 20.18 | 17.97 |
| KRH70661 | Soybean | mitochondrion, nucleus | 28.51 | 17.83 |
| GSMUA_Achr8P31290_001 | Banana | nucleus | 9.87 | 17.79 |
| GSMUA_Achr10P... | Banana | nucleus | 19.08 | 17.19 |
| GSMUA_Achr4P05140_001 | Banana | nucleus | 10.75 | 16.55 |
| GSMUA_Achr3P26700_001 | Banana | nucleus | 10.53 | 16.44 |
| GSMUA_Achr9P24150_001 | Banana | nucleus | 10.53 | 15.95 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 17.32 | 15.37 |
| GSMUA_Achr4P04290_001 | Banana | nucleus | 7.46 | 15.32 |
| GSMUA_Achr4P04180_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 9.87 | 14.66 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 18.64 | 14.43 |
| GSMUA_Achr4P03540_001 | Banana | nucleus | 5.92 | 13.71 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 19.52 | 13.69 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 16.01 | 12.72 |
| GSMUA_Achr4P30500_001 | Banana | nucleus | 8.55 | 11.5 |
| GSMUA_Achr4P06080_001 | Banana | nucleus | 11.4 | 11.23 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P12850_001 | EnsemblPlants:GSMUA_Achr4T12850_001 | EnsemblPlantsGene:GSMUA_Achr4G12850_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF94 | PFAM:PF13639 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002961D1B | UniProt:M0SNF0 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G12850_001]
Coordinates
chr4:+:9529269..9537859
Molecular Weight (calculated)
50550.2 Da
IEP (calculated)
7.033
GRAVY (calculated)
-0.550
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSSSGKILR ESVNHAEEEI NARISTITRV PASDPHPFGS VAGNDESFQR NTRMRINHAD PANTSTPNLW PQENIITRHN LWSAHQLSSP DVPLNPSSEL
101: RLVGGNLGSR RQHYVHTTPG LFPDLYPIPQ SEASTAEVGS SSGSPAIAVD GAAGVQNSSS VSNNISEQIY VLPANTRRSV RDQTNWGLTN GSTVFSGNAL
201: PTSQVGTNLG IHQSQGANWL PHQHRRRRVS EAPRRSVSSH TETRGRSISL LPHHDHSSIV QDVGHHQSGA VSRGHQQTYI RSNMLHRQND GALGIPLSMR
301: TLVAAREARS RISEIRNVFD LIRRGDSLLL EDVLLFEQSV FPRGANLHDR HRDMRMDVDN MSYEELLALG ERIGTVNTGL TEEKILSNLR QWKYVSIAAE
401: PSEEEVEPCC ICREDYLEGE ELGRLDCGHD FHTACIKQWL LIKNLCPICK TTALST
101: RLVGGNLGSR RQHYVHTTPG LFPDLYPIPQ SEASTAEVGS SSGSPAIAVD GAAGVQNSSS VSNNISEQIY VLPANTRRSV RDQTNWGLTN GSTVFSGNAL
201: PTSQVGTNLG IHQSQGANWL PHQHRRRRVS EAPRRSVSSH TETRGRSISL LPHHDHSSIV QDVGHHQSGA VSRGHQQTYI RSNMLHRQND GALGIPLSMR
301: TLVAAREARS RISEIRNVFD LIRRGDSLLL EDVLLFEQSV FPRGANLHDR HRDMRMDVDN MSYEELLALG ERIGTVNTGL TEEKILSNLR QWKYVSIAAE
401: PSEEEVEPCC ICREDYLEGE ELGRLDCGHD FHTACIKQWL LIKNLCPICK TTALST
001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST
Arabidopsis Description
MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.