CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50319	Soybean	nucleus	92.18	93.99
PGSC0003DMT400079217	Potato	cytosol	9.19	67.68
KRH05664	Soybean	nucleus	10.84	65.29
GSMUA_Achr4P06090_001	Banana	cytosol	11.39	56.46
VIT_03s0063g00160.t01	Wine grape	nucleus	45.54	45.23
Zm00001d026446_P001	Maize	cytosol	10.97	43.48
Bra015221.1-P	Field mustard	nucleus	32.1	39.2
CDY62314	Canola	nucleus	30.86	38.01
CDY37230	Canola	nucleus	30.59	37.86
Bra039842.1-P	Field mustard	nucleus	30.73	37.52
AT4G34040.1	Thale cress	nucleus	33.47	36.64
KRH61306	Soybean	nucleus	31.14	34.71
KRH52013	Soybean	nucleus	33.06	34.04
Solyc01g107940.2.1	Tomato	nucleus	32.51	33.52
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	33.2	33.33
PGSC0003DMT400066252	Potato	nucleus	32.65	33.29
KRH61311	Soybean	nucleus	33.33	33.11
Solyc01g107930.2.1	Tomato	nucleus	32.24	32.73
AT2G15530.4	Thale cress	nucleus	32.92	30.77
Zm00001d002080_P002	Maize	nucleus	26.06	28.66
EES11547	Sorghum	nucleus	25.93	28.64
GSMUA_Achr4P12850_001	Banana	nucleus	17.83	28.51
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	22.5	28.37
Zm00001d026445_P001	Maize	nucleus	25.1	27.94
HORVU2Hr1G113930.2	Barley	nucleus	24.97	27.83
TraesCS2B01G542200.2	Wheat	nucleus	25.51	27.76
TraesCS2A01G514400.3	Wheat	nucleus	25.24	27.5
TraesCS2D01G516000.1	Wheat	nucleus	25.1	27.35
Os04t0648800-01	Rice	nucleus	24.97	27.29
KRH53246	Soybean	nucleus	6.72	26.78
GSMUA_Achr9P22530_001	Banana	nucleus	23.18	26.24
EES10483	Sorghum	nucleus	24.28	25.43
KRH64669	Soybean	nucleus	7.0	25.25
Zm00001d004300_P003	Maize	nucleus	23.59	24.78
KRH05663	Soybean	cytosol	19.34	24.27
Zm00001d025027_P002	Maize	nucleus	22.91	23.99
Os04t0185500-01	Rice	nucleus	23.05	23.7
KRH17980	Soybean	nucleus	6.58	23.65
HORVU2Hr1G003340.5	Barley	nucleus	22.63	23.37
KRH41763	Soybean	nucleus	12.07	23.34
TraesCS2B01G030700.1	Wheat	nucleus	22.09	22.97
TraesCS2D01G022900.1	Wheat	nucleus	22.09	22.97
TraesCS2A01G022100.1	Wheat	nucleus	21.95	22.82
KRH32434	Soybean	nucleus	16.87	22.82
KRH04957	Soybean	nucleus	16.6	22.74
KRH16134	Soybean	nucleus	17.15	22.52
KRH16389	Soybean	nucleus	6.31	22.44
KRH67668	Soybean	nucleus	16.87	22.32
KRH48568	Soybean	nucleus	10.84	22.32
KRG95955	Soybean	nucleus	16.74	22.22
KRH19845	Soybean	nucleus	16.6	22.0
KRH39137	Soybean	nucleus	10.97	21.68
KRH27487	Soybean	cytosol, nucleus, plastid	7.13	21.05
KRH60461	Soybean	nucleus	12.35	20.88
KRH52597	Soybean	nucleus	15.36	20.7
KRH30071	Soybean	cytosol	9.74	20.64
KRH29702	Soybean	nucleus	7.0	20.56
KRH20832	Soybean	nucleus	6.86	20.24
KRH55161	Soybean	nucleus	12.48	19.87
KRH24699	Soybean	nucleus	6.72	19.76
KRH26195	Soybean	nucleus	12.21	19.43
KRH22017	Soybean	nucleus	13.58	18.75
KRH55165	Soybean	nucleus	7.96	18.65
KRG90628	Soybean	nucleus	8.37	18.21
KRH61936	Soybean	nucleus	13.31	17.41
KRH36126	Soybean	cytosol, mitochondrion, nucleus	8.37	17.18
KRH55090	Soybean	nucleus	8.5	16.67
KRH04591	Soybean	nucleus	7.27	15.73
KRH04592	Soybean	nucleus	7.13	15.57

Protein Annotations

EntrezGene:100820322	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02000789	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G103300
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	UniProt:K7K7J1	EnsemblPlants:KRH70661	ProteinID:KRH70661	ProteinID:KRH70661.1
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF101	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000296232C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:9805723..9813362

Molecular Weight (calculated)

79201.4 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.589

Length

729 amino acids

Sequence
(BLAST)

001: MIWWDSLILM QGQRRTVGSF PAIVSMMQGP SSSGTDMNHQ SSLNHVQNAV DFCLSDYRGS SGETACLRGT GHNVQSFSGW NTGESSSRLN LINQVNDEGL
101: KSEHGLSSSY NAATEDDLRS EEGQFKANNV IFPVSSNTNL HGNQSRVHPS FLQGSSSTHI NQNISLDMGH VANAADRGKG KEAGSSVNAN NTSGIDREKT
201: LFGSASCNHT GASSESSGYM AWGDSANSSS SLVNWGPSCK RKALEGSSRQ LCSGGSSSTL VQSGNGCWPT DPVDLNASSD LTDSTPIEDI PVTSPPLFQN
301: ATNEERQEAP NGFPLISIAE NVERPLRNFD RRMSHLQHQE SVPLNLPSTG SARHHNHSSL HQAPGSHSIN DSLELRLTAG GTSSANSGAS LNQSPALRIH
401: SFPWNRTANP RGARSSTSYN SGERAVREDF NLRMFPRDST EHPMNVPASS GHEPIGWHTP SGNVNNSGGA PPPSWIGSSS NVHSPANRSW IFNHEVPAEN
501: MQSVSEFSPW SLFPSISSAS GVHNAHSAPS SSGPPSFTQG SSSNQSYART ALVMERRGGD VLSGGPHSLR ALTFDNEGRR RLISEIRQVL MAMRRGENLR
601: AEDYMVFDHP FLYHGMAEMH DRHREMRLDV DNMSYEELLA LEEHIGDVST GLNEDVIIKL MKQRIYVRAI IMTDSYTDLE PCCICQEEFS DGENVGSLDC
701: GHEFHSGCIK QWLMQKNLCP ICKTTALAT

Best Arabidopsis Sequence Match ( AT2G15530.1 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.