Factsheet for Os04t0648800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11547	Sorghum	nucleus	72.86	73.64
Zm00001d026445_P001	Maize	nucleus	72.11	73.44
TraesCS2D01G516000.1	Wheat	nucleus	73.46	73.24
TraesCS2A01G514400.3	Wheat	nucleus	73.31	73.09
Zm00001d002080_P002	Maize	nucleus	72.41	72.85
TraesCS2B01G542200.2	Wheat	nucleus	73.16	72.84
HORVU2Hr1G113930.2	Barley	nucleus	71.21	72.63
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	62.82	72.49
Zm00001d026446_P001	Maize	cytosol	18.14	65.76
PGSC0003DMT400079217	Potato	cytosol	9.75	65.66
VIT_03s0063g00160.t01	Wine grape	nucleus	33.28	30.25
Bra015221.1-P	Field mustard	nucleus	24.14	26.97
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	29.24	26.86
AT4G34040.1	Thale cress	nucleus	26.69	26.73
KRH50319	Soybean	nucleus	28.19	26.29
CDY62314	Canola	nucleus	23.09	26.01
CDY37230	Canola	nucleus	22.49	25.47
PGSC0003DMT400066252	Potato	nucleus	27.14	25.31
Bra039842.1-P	Field mustard	nucleus	22.64	25.29
Solyc01g107940.2.1	Tomato	nucleus	26.54	25.04
KRH70661	Soybean	mitochondrion, nucleus	27.29	24.97
Solyc01g107930.2.1	Tomato	nucleus	26.84	24.93
Os04t0185500-01	Rice	nucleus	26.39	24.82
AT2G15530.4	Thale cress	nucleus	26.69	22.82
Os03t0173900-01	Rice	nucleus	8.1	21.6
Os04t0603200-01	Rice	nucleus	10.49	21.28
Os08t0241400-00	Rice	nucleus	11.84	20.95
Os05t0550000-00	Rice	nucleus	10.94	20.05
Os04t0571200-01	Rice	nucleus	7.5	19.68
Os01t0159300-01	Rice	nucleus	14.69	19.56
Os05t0163400-03	Rice	nucleus	15.44	19.32
Os01t0667700-02	Rice	nucleus	15.14	19.27
Os05t0564300-01	Rice	nucleus	14.09	18.8
Os08t0548300-01	Rice	nucleus	7.95	17.38
Os06t0695600-01	Rice	nucleus	14.84	17.1
Os09t0535100-01	Rice	nucleus	8.25	16.92
Os06t0125800-01	Rice	nucleus	6.45	16.48
Os02t0150700-01	Rice	extracellular	15.74	16.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:9272591	EMBL:AK071468	ProteinID:BAH92849.1	ProteinID:BAS91331.1
ProteinID:CAD41707.2	ProteinID:EAZ32210.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0040007	GO:GO:0040008	GO:GO:0043161	GO:GO:0046872
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os04g0648800	EnsemblPlants:Os04t0648800-01	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF127	UniProt:Q7XTV7	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00001B0D21	RefSeq:XP_015636255.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

OsHAL3-interacting protein 1, Heading date Associated Factor 1C3HC4 RING domain-containing E3 ubiquitin ligase, Modulation of heading date by physically interacting with Hd1 (Os04t0648800-01);Similar to Zinc finger, C3HC4 type family protein. (Os04t0648800-02)

Coordinates

chr4:+:33022835..33028358

Molecular Weight (calculated)

72645.1 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.619

Length

667 amino acids

Sequence
(BLAST)

001: MQGQKNSVEQ LADVFGFDHA SSSGNPVMDQ QGYWNNILGS VESHNLQGYQ VNRSDGTIPY GNGVHQNGTF LGFWESGEAS ASGSSLHFGG SNEIKAEQRN
101: IGGGLRIGER RLVAERNLSL DNVDIGLNIN GNDLSGENSN VNGASQGSEL HGGCSHTGSN GQASELRLHP YRTFILGADQ PEPFNSLNGS ENPLGDFSLM
201: PEGIDQRPGS SLDGRRLACK RKNIEGVNGQ CSAGASTSFS HRNDSIFHNI ASSSHNPSPS TNLPSPNCLL VPSTLDEQLP RYGATTAGLS SSSYDPSGGN
301: NNSGGSQRSF RPRTSLAQHI GPYGVWPSSS TIRHSNSWNH QPPPFQSSFD EPPEVIPVVS SLNFQYQHPM NVVPGIPQMS HRFTGPGASS SRTGNLENRI
401: IGSEEFSARN VVATSFPDAV PPAALDMRHL IPEPSSWNVD GRATTIPGNV PSSSRANTNS MVNPPAGSPF IAHQNLHRRN PRNLSEEISR LSGALRGHQH
501: PRLRSGFLLE RQGDGVWGVP LSTRSREGRR LIEIRNALEM IHRGENVRFE SIFYGGVDIH DRHRDMRLDI DNMSYEELLA LEERIGNVST GLSEEEVTKL
601: LKQRKFSSWR LEASVEEEPC CICQEEYVDG DDLGTLDCGH DFHVGCVRQW LVVKNTCPIC KNTALKS

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.