Factsheet for Os06t0125800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G009940.2	Barley	nucleus	53.26	58.4
TraesCS7D01G049800.1	Wheat	nucleus	55.17	57.37
KXG19166	Sorghum	nucleus	59.39	56.99
TraesCS4A01G441400.1	Wheat	nucleus	54.41	56.8
TraesCS7A01G054700.2	Wheat	nucleus	54.79	56.75
Zm00001d045517_P001	Maize	mitochondrion, nucleus	55.56	54.1
Os03t0173900-01	Rice	nucleus	30.27	31.6
Os04t0571200-01	Rice	nucleus	30.27	31.1
Os09t0535100-01	Rice	nucleus	23.75	19.08
Os08t0548300-01	Rice	nucleus	22.22	19.02
Os05t0550000-00	Rice	nucleus	16.86	12.09
Os08t0241400-00	Rice	nucleus	14.18	9.81
Os05t0564300-01	Rice	nucleus	18.77	9.8
Os01t0667700-02	Rice	nucleus	18.77	9.35
Os01t0159300-01	Rice	nucleus	15.71	8.18
Os05t0163400-03	Rice	nucleus	16.48	8.07
Os04t0603200-01	Rice	nucleus	9.96	7.9
Os06t0695600-01	Rice	nucleus	16.48	7.43
Os04t0648800-01	Rice	nucleus	16.48	6.45
Os02t0150700-01	Rice	extracellular	15.33	6.24
Os04t0185500-01	Rice	nucleus	16.86	6.21

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4339966	ProteinID:ADY16683.1	EMBL:AK068302	EMBL:AK104425
ProteinID:BAA90806.1	ProteinID:BAF18567.1	ProteinID:BAS95917.1	ProteinID:EAZ35669.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	EMBL:HQ123581
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os06g0125800	EnsemblPlants:Os06t0125800-01	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR14155	PANTHER:PTHR14155:SF108	UniProt:Q9LWV9	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000005F307
RefSeq:XP_015640871.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

BLAST AND BTH INDUCED 1Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0125800-01)

Coordinates

chr6:+:1383618..1385968

Molecular Weight (calculated)

29132.4 Da

IEP (calculated)

4.143

GRAVY (calculated)

-0.667

Length

261 amino acids

Sequence
(BLAST)

001: MATVGQPDAM RRITVHYVNP PPIAGAGEAH VDGLDDEVLD YVIGDVLQDQ EGLYQSILYG KYGDDMRGAR NTALAQSDGL HYYYHGENSS GEATTSRNSE
101: IDQQIEYDLV FARQLQAMDN LTIETPADED DDISCVPSPS DSETDEPAEG NNEEAATQDD NDDPDNMTYE QRQALVESVG NENRGLSDLL ISYLETWKYK
201: SGFFPRKANH DNCPICLSAF RRRETLITLA CKHSYHEGCI ARWLKIDKAC PVCKYEVFGP S

Best Arabidopsis Sequence Match ( AT5G52140.1 )
(BLAST)

001: MSRLVNQSSV DENIAVYLQN ELSELTVNDY AIGREIQQQY QNKSICNDAA IALEIQKEEE ACVHSCLHDD EGLARTLQDL EANLQPSLSD DEKLARYLQE
101: HDELANNTED DIQETHHHQY HPMQVNRSYI PQRDAPSSSR AIFHYDDGEN FSGRYTHTHS PSSISHNPTD DENNDPENMT YEELTELGDS VGDVGKGLSQ
201: ERISRLRTHK YGTKTKSWYC LHMKKKFVAD DSQCSICLME YAKGDKITTL PCKHIYHKDC ISQWLKQNKV CCICKAEVYP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q1PDK3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.