Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12797 | Sorghum | nucleus | 71.73 | 63.1 |
| Zm00001d026248_P001 | Maize | nucleus | 67.17 | 58.16 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 68.39 | 56.68 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 62.61 | 55.23 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 62.92 | 55.2 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 60.49 | 53.93 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 60.79 | 53.76 |
| Os08t0241400-00 | Rice | nucleus | 50.46 | 44.03 |
| CDX85750 | Canola | nucleus | 23.1 | 19.69 |
| CDX97032 | Canola | plastid | 19.45 | 19.1 |
| CDY13429 | Canola | cytosol | 14.89 | 18.99 |
| CDY71882 | Canola | plastid | 19.76 | 18.57 |
| Bra024009.1-P | Field mustard | nucleus | 9.12 | 17.14 |
| CDX95473 | Canola | nucleus | 21.58 | 15.3 |
| AT5G10650.2 | Thale cress | nucleus | 24.32 | 15.24 |
| CDX97044 | Canola | nucleus | 23.4 | 15.1 |
| KRH04957 | Soybean | nucleus | 24.32 | 15.04 |
| CDX78393 | Canola | nucleus | 22.49 | 14.98 |
| Bra006070.1-P | Field mustard | nucleus | 22.49 | 14.95 |
| Solyc08g006460.2.1 | Tomato | nucleus | 24.01 | 14.88 |
| CDX69813 | Canola | mitochondrion | 24.01 | 14.82 |
| CDX70363 | Canola | nucleus | 21.88 | 14.81 |
| KRH16134 | Soybean | nucleus | 24.62 | 14.59 |
| PGSC0003DMT400067670 | Potato | nucleus | 23.4 | 14.58 |
| Os04t0571200-01 | Rice | nucleus | 11.25 | 14.57 |
| Bra009015.1-P | Field mustard | plastid | 23.4 | 14.45 |
| AT5G24870.2 | Thale cress | nucleus | 22.8 | 14.42 |
| Solyc12g096420.1.1 | Tomato | nucleus | 24.01 | 14.34 |
| PGSC0003DMT400075959 | Potato | nucleus | 23.71 | 14.31 |
| Os05t0550000-00 | Rice | nucleus | 15.81 | 14.29 |
| CDY68658 | Canola | nucleus | 20.06 | 14.07 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 23.4 | 14.0 |
| Os06t0695600-01 | Rice | nucleus | 24.62 | 13.99 |
| KRH52597 | Soybean | nucleus | 22.8 | 13.86 |
| KRH61936 | Soybean | nucleus | 23.1 | 13.64 |
| CDX88140 | Canola | nucleus | 19.45 | 13.28 |
| Os03t0173900-01 | Rice | nucleus | 9.73 | 12.8 |
| CDY63645 | Canola | nucleus | 17.02 | 12.12 |
| CDY13433 | Canola | nucleus | 17.02 | 12.02 |
| Bra024007.1-P | Field mustard | nucleus | 17.02 | 11.99 |
| Os02t0150700-01 | Rice | extracellular | 23.1 | 11.86 |
| Os09t0535100-01 | Rice | nucleus | 11.25 | 11.38 |
| Os05t0163400-03 | Rice | nucleus | 18.24 | 11.26 |
| AT4G31450.2 | Thale cress | nucleus | 16.41 | 10.87 |
| Os01t0159300-01 | Rice | nucleus | 16.41 | 10.78 |
| Os04t0648800-01 | Rice | nucleus | 21.28 | 10.49 |
| Os08t0548300-01 | Rice | nucleus | 9.73 | 10.49 |
| Os05t0564300-01 | Rice | nucleus | 15.81 | 10.4 |
| CDY40109 | Canola | nucleus | 5.78 | 10.22 |
| Os01t0667700-02 | Rice | nucleus | 16.11 | 10.11 |
| Os06t0125800-01 | Rice | nucleus | 7.9 | 9.96 |
| Os04t0185500-01 | Rice | nucleus | 20.97 | 9.73 |
| Bra009800.1-P | Field mustard | nucleus | 10.03 | 8.05 |
Protein Annotations
| EnsemblPlants:Os04t0603200-01 | EnsemblPlantsGene:Os04g0603200 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF46 | ProteinID:BAF15693.1 | ProteinID:BAS90865.1 |
| ProteinID:BAS90866.1 | SEG:seg | UniParc:UPI0000DD925A | UniProt:Q0JAE4 | MapMan:35.2 | : |
Description
RING finger protein with microtubule-targeting domain 1Similar to C-terminal zinc-finger (Fragment). (Os04t0603200-01);Similar to OSIGBa0118P15.2 protein. (Os04t0603200-03)
Coordinates
chr4:-:30439477..30442817
Molecular Weight (calculated)
36629.4 Da
IEP (calculated)
9.257
GRAVY (calculated)
-0.897
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDHMGRRTV GGLLFTKGGS ILLFREDSAR HKATNCCTRH GCSSKHLAGK DKQTHRAATA AKEASETPRR SQIFRKPSTR TPQGSTATDN ISRNAASSYS
101: ENDNRPRETP GRDLIARLKE RVNASRKRSL NRENSPSSPN GLSATSSSSS RTVSRPSHRA ASRIRKADEG ANAGAVNVRR DSSGDTRRNS DRDVDDFLLV
201: EQAARDSTEG FISGFLARYR SNHQGLLSSL DDSIEDANGY WRFNMEGSEE LENYFIFNDR YRGMRMDIDG MSYEELLALG DRIGTVSTGL SEDALSKCLD
301: RSMYMATTSG THEDCERKCS ICQARIFRW
101: ENDNRPRETP GRDLIARLKE RVNASRKRSL NRENSPSSPN GLSATSSSSS RTVSRPSHRA ASRIRKADEG ANAGAVNVRR DSSGDTRRNS DRDVDDFLLV
201: EQAARDSTEG FISGFLARYR SNHQGLLSSL DDSIEDANGY WRFNMEGSEE LENYFIFNDR YRGMRMDIDG MSYEELLALG DRIGTVSTGL SEDALSKCLD
301: RSMYMATTSG THEDCERKCS ICQARIFRW
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQV FLKIYLHPNL YPKLEIIHCF
501: V
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQV FLKIYLHPNL YPKLEIIHCF
501: V
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.