Factsheet for Os05t0564300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22536	Sorghum	nucleus	59.8	58.86
Zm00001d009571_P002	Maize	nucleus	57.6	56.25
Zm00001d039015_P002	Maize	cytosol	44.8	54.77
HORVU1Hr1G087900.1	Barley	cytosol	55.4	53.27
TraesCS1D01G405800.9	Wheat	cytosol	54.6	52.1
TraesCS1A01G398300.8	Wheat	cytosol	55.0	51.02
TraesCS1B01G426200.9	Wheat	cytosol	55.4	50.55
Os01t0667700-02	Rice	nucleus	52.6	50.19
Solyc12g014070.1.1	Tomato	nucleus	23.0	21.5
VIT_19s0014g01850.t01	Wine grape	nucleus	22.8	21.19
PGSC0003DMT400039631	Potato	nucleus	22.6	21.08
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	16.4	20.87
Os03t0173900-01	Rice	nucleus	10.4	20.8
VIT_03s0097g00680.t01	Wine grape	nucleus	17.2	20.43
KRH30071	Soybean	cytosol	13.8	20.06
CDY26006	Canola	nucleus	18.4	19.91
VIT_03s0088g01090.t01	Wine grape	nucleus	18.0	19.69
Solyc10g007140.2.1	Tomato	nucleus	20.4	19.65
PGSC0003DMT400054921	Potato	nucleus	20.4	19.65
CDY24110	Canola	nucleus	18.0	19.57
Bra039659.1-P	Field mustard	nucleus	18.0	19.57
AT3G15070.1	Thale cress	nucleus	19.0	19.55
CDY25871	Canola	nucleus	18.6	19.46
AT1G53190.1	Thale cress	nucleus	19.2	19.43
KRH55161	Soybean	nucleus	17.8	19.43
KRH26195	Soybean	nucleus	17.8	19.43
Bra038109.1-P	Field mustard	nucleus	18.6	19.38
KRH22017	Soybean	nucleus	20.4	19.32
KRH55165	Soybean	nucleus	12.0	19.29
Os04t0571200-01	Rice	nucleus	9.8	19.29
Os05t0550000-00	Rice	nucleus	14.0	19.23
CDY55839	Canola	nucleus	18.6	19.02
Os06t0125800-01	Rice	nucleus	9.8	18.77
CDX97629	Canola	nucleus	16.4	18.59
CDY68521	Canola	nucleus	16.4	18.59
Bra027282.1-P	Field mustard	nucleus	16.0	17.98
CDX82450	Canola	nucleus	16.0	17.86
Os08t0241400-00	Rice	nucleus	13.4	17.77
CDX75805	Canola	cytosol	15.6	17.61
Os05t0163400-03	Rice	nucleus	18.6	17.45
KRH55090	Soybean	nucleus	12.8	17.2
Bra001582.1-P	Field mustard	nucleus	14.8	16.93
Os08t0548300-01	Rice	nucleus	10.2	16.72
Os01t0159300-01	Rice	nucleus	16.6	16.57
Os04t0603200-01	Rice	nucleus	10.4	15.81
Os04t0185500-01	Rice	nucleus	22.4	15.8
Os09t0535100-01	Rice	nucleus	10.0	15.38
Os04t0648800-01	Rice	nucleus	18.8	14.09
Os06t0695600-01	Rice	nucleus	16.0	13.82
Os02t0150700-01	Rice	extracellular	16.6	12.95
Solyc07g062720.1.1	Tomato	nucleus	20.0	12.9
PGSC0003DMT400032385	Potato	nucleus	20.0	12.32

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4339622	ProteinID:AAT77400.1	EMBL:AK065766	ProteinID:BAF18246.1
ProteinID:BAS95353.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os05g0564300	EnsemblPlants:Os05t0564300-01	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	UniProt:Q6AUF9	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00003FE69D	RefSeq:XP_015639844.1	RefSeq:XP_015639845.1	RefSeq:XP_015639846.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os05t0564300-01)

Coordinates

chr5:+:28085122..28092378

Molecular Weight (calculated)

54539.6 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.413

Length

500 amino acids

Sequence
(BLAST)

001: MLQRNMVWTH QVASPENQVQ PESFYHGGAG SNLSNLSVQV AVGVPGNTDF RSHYESINLQ HQHVQNPYPH VGVASSSVFP STMYNPCIST TAVDRYVPPI
101: QSFGLGNPLL LPLYHQLAQG SMDENGSSGN FCDSVREFIK RKNALLVGGH HFVNSFASSS SSAYVPPNPL HRSWNASFEA NILPSTGVSN PPEYSSADSL
201: NNSNSMASHP ELVHHGNYVF PAGHMSQYNA WIAQASRTGG VPQWEHGNAA ANPPGGFVHS GTIDMPNGGL QGYQAGPFAN YYGPLPHFHQ NPLNSMQHPA
301: LFNHIQMQVP HQHCLSNNLL HHPSGNGLPL DPRILAISSN SGHTFGPTAQ PSLANQVNAG SSRIQPYENA PFVDLSRLYE AGVIDEHRDM RLDVDSMTYE
401: ELVALEERIG NVNSGFTESY IEENLKSSSY VPDADCMPDQ SSVEKDACII CQEEYEAKEL VGTLGCGHKY HAMCIKGWLM VKNLCPICKT TALPADRRNG

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.