CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039015_P002	Maize	cytosol	70.67	87.78
Zm00001d009571_P002	Maize	nucleus	87.6	86.91
Os05t0564300-01	Rice	nucleus	58.86	59.8
HORVU1Hr1G087900.1	Barley	cytosol	50.98	49.81
EES03404	Sorghum	nucleus	50.98	49.71
TraesCS1D01G405800.9	Wheat	cytosol	50.59	49.05
TraesCS1A01G398300.8	Wheat	cytosol	50.59	47.68
TraesCS1B01G426200.9	Wheat	cytosol	51.38	47.63
OQU80744	Sorghum	mitochondrion	7.87	27.78
EER99218	Sorghum	nucleus	7.87	22.86
VIT_19s0014g01850.t01	Wine grape	nucleus	23.03	21.75
Solyc12g014070.1.1	Tomato	nucleus	22.83	21.68
PGSC0003DMT400039631	Potato	nucleus	22.64	21.46
OQU87370	Sorghum	nucleus	14.57	21.2
EES11283	Sorghum	nucleus	10.24	21.05
KRH26195	Soybean	nucleus	18.9	20.96
KXG40075	Sorghum	cytosol	10.24	20.88
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	15.94	20.61
KRH55161	Soybean	nucleus	18.5	20.52
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	15.16	20.48
KRH30071	Soybean	cytosol	13.78	20.35
CDY26006	Canola	nucleus	18.11	19.91
Bra039659.1-P	Field mustard	nucleus	17.91	19.78
CDY24110	Canola	nucleus	17.91	19.78
KRH55165	Soybean	nucleus	12.01	19.61
OQU80147	Sorghum	nucleus	13.78	19.55
KRH22017	Soybean	nucleus	20.28	19.51
Solyc10g007140.2.1	Tomato	nucleus	19.68	19.27
PGSC0003DMT400054921	Potato	nucleus	19.68	19.27
CDY68521	Canola	nucleus	16.54	19.05
VIT_03s0088g01090.t01	Wine grape	nucleus	17.13	19.04
CDY25871	Canola	nucleus	17.72	18.83
VIT_03s0097g00680.t01	Wine grape	nucleus	15.55	18.76
Bra038109.1-P	Field mustard	nucleus	17.72	18.75
CDX82450	Canola	nucleus	16.54	18.75
CDX75805	Canola	cytosol	16.34	18.74
CDX97629	Canola	nucleus	16.14	18.59
Bra001582.1-P	Field mustard	nucleus	15.94	18.54
EES12797	Sorghum	nucleus	13.58	18.45
Bra027282.1-P	Field mustard	nucleus	16.14	18.43
AT1G53190.1	Thale cress	nucleus	17.91	18.42
CDY55839	Canola	nucleus	17.72	18.4
AT3G15070.1	Thale cress	nucleus	17.52	18.31
KRH55090	Soybean	nucleus	12.99	17.74
EER97094	Sorghum	nucleus	11.22	17.59
EES15239	Sorghum	nucleus	10.63	17.2
EES19093	Sorghum	nucleus	17.32	16.36
KXG19166	Sorghum	nucleus	8.46	15.81
EES04530	Sorghum	nucleus	15.75	15.44
EES00281	Sorghum	nucleus	15.55	15.34
EES10483	Sorghum	nucleus	20.08	14.66
KXG20741	Sorghum	nucleus	15.75	13.56
EES11547	Sorghum	nucleus	17.32	13.33
Solyc07g062720.1.1	Tomato	nucleus	18.9	12.39
PGSC0003DMT400032385	Potato	nucleus	18.9	11.82

Protein Annotations

EnsemblPlants:KXG22536	EnsemblPlantsGene:SORBI_3009G232800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	PFAM:PF13639	PFscan:PS50089	ProteinID:KXG22536
ProteinID:KXG22536.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0003C69FD2	UniProt:A0A1B6PA17	MapMan:35.1

Description

hypothetical protein

Coordinates

chr9:+:57248565..57256196

Molecular Weight (calculated)

55521.8 Da

IEP (calculated)

6.419

GRAVY (calculated)

-0.400

Length

508 amino acids

Sequence
(BLAST)

001: MSHRNMLWTH QSVNPEWEQG HVQVQPGSSY YAGTSDSSNL GMQVAVGIPG NTANVGICDL RNHERPHVHN SYPHASVTSR FVFPTTMYNP SMSAAAVNIY
101: IPQTQSFGLG NVLSPSLHNH VSTGTIDESS SSVNFGDSAI GFMKRKNAVV AGNHHFLHGF AGSSSSVHAP QNPVRGPWNA SSQSNCLPGY AASNLPEYHN
201: SNGWPFLEES SADASNCFSS VAARPELVPH GNYLYPSHIS QCNTWVPQAA SHGVPQWGYS NAMVNPPGTA DMPNGNIQDY QTGHSSIHGP LPLFCQNPLH
301: SMQAQAPQIQ VPHQQFVGNN VVHGLNPSAV GHPLDPRILA LPFNAEHTFG HPMHPPLINQ ANNGSLRILP YQNATVMDHS RIYEAGHVID EHRDMRLDVD
401: NMTYEELVAL QEQIGDVNTG LTESYIQENL RSTFYVPGAA SIPDQFSELS LENDACIICQ EEYEAKELIG TLGCGHKYHV NCIKQWLMIK NLCPICKTTA
501: LSSDRRNG

Best Arabidopsis Sequence Match ( AT5G42940.1 )
(BLAST)

001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A

Arabidopsis Description

RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.