Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24110 | Canola | nucleus | 93.07 | 93.48 |
| AT1G53190.1 | Thale cress | nucleus | 84.42 | 78.95 |
| CDY25871 | Canola | nucleus | 81.39 | 78.66 |
| CDY55839 | Canola | nucleus | 81.82 | 77.3 |
| CDX75805 | Canola | cytosol | 47.19 | 49.21 |
| CDX82450 | Canola | nucleus | 47.19 | 48.66 |
| CDX97629 | Canola | nucleus | 43.72 | 45.8 |
| CDY68521 | Canola | nucleus | 43.07 | 45.12 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 39.18 | 33.64 |
| KRH55161 | Soybean | nucleus | 29.44 | 29.69 |
| KRH26195 | Soybean | nucleus | 28.57 | 28.82 |
| KRH22017 | Soybean | nucleus | 32.68 | 28.6 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 24.24 | 28.5 |
| KRH30071 | Soybean | cytosol | 21.21 | 28.49 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 28.14 | 28.45 |
| Solyc12g014070.1.1 | Tomato | nucleus | 32.25 | 27.85 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 25.32 | 27.79 |
| PGSC0003DMT400039631 | Potato | nucleus | 31.82 | 27.43 |
| CDY13429 | Canola | cytosol | 14.94 | 26.74 |
| PGSC0003DMT400054921 | Potato | nucleus | 29.87 | 26.59 |
| Solyc10g007140.2.1 | Tomato | nucleus | 29.87 | 26.59 |
| KRH55165 | Soybean | nucleus | 17.53 | 26.05 |
| KRH55090 | Soybean | nucleus | 19.05 | 23.66 |
| CDY53710 | Canola | nucleus | 11.47 | 21.9 |
| CDX77848 | Canola | nucleus | 9.96 | 21.7 |
| CDY67192 | Canola | nucleus | 9.96 | 21.6 |
| CDX93901 | Canola | nucleus | 11.04 | 21.25 |
| CDX97032 | Canola | plastid | 15.15 | 20.9 |
| CDY71882 | Canola | plastid | 15.37 | 20.29 |
| CDY32973 | Canola | nucleus | 17.53 | 19.76 |
| CDY43590 | Canola | nucleus | 17.53 | 19.24 |
| Os01t0667700-02 | Rice | nucleus | 21.64 | 19.08 |
| EES03404 | Sorghum | nucleus | 21.21 | 18.81 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 21.43 | 18.75 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 21.21 | 18.6 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 21.21 | 18.56 |
| Zm00001d011541_P004 | Maize | nucleus | 21.21 | 18.49 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 20.78 | 18.46 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 21.0 | 18.44 |
| Os05t0564300-01 | Rice | nucleus | 19.91 | 18.4 |
| CDX91624 | Canola | nucleus | 8.66 | 18.18 |
| KXG22536 | Sorghum | nucleus | 19.91 | 18.11 |
| CDX79718 | Canola | nucleus | 20.78 | 18.08 |
| CDY63645 | Canola | nucleus | 17.97 | 17.97 |
| CDY27083 | Canola | nucleus | 8.44 | 17.81 |
| Zm00001d009571_P002 | Maize | nucleus | 19.7 | 17.77 |
| CDY55435 | Canola | nucleus | 20.13 | 17.61 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 20.35 | 17.44 |
| CDY13433 | Canola | nucleus | 17.53 | 17.38 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 19.7 | 17.37 |
| CDX85750 | Canola | nucleus | 14.5 | 17.36 |
| CDY11092 | Canola | cytosol, plastid | 12.99 | 17.24 |
| CDY68424 | Canola | nucleus | 19.91 | 17.13 |
| CDX91625 | Canola | cytosol | 8.44 | 17.03 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 20.13 | 16.97 |
| CDY46757 | Canola | nucleus | 19.48 | 16.89 |
| CDY60141 | Canola | plastid | 12.99 | 16.81 |
| CDX83878 | Canola | nucleus | 12.99 | 16.81 |
| Solyc07g062720.1.1 | Tomato | nucleus | 28.14 | 16.77 |
| PGSC0003DMT400032385 | Potato | nucleus | 29.0 | 16.5 |
| CDY17114 | Canola | nucleus | 18.83 | 16.38 |
| CDX95473 | Canola | nucleus | 16.45 | 16.38 |
| CDX73013 | Canola | plastid | 12.55 | 16.34 |
| CDX70363 | Canola | nucleus | 17.1 | 16.26 |
| CDX96741 | Canola | nucleus | 12.77 | 16.21 |
| CDY00512 | Canola | nucleus | 9.52 | 16.12 |
| CDY31919 | Canola | nucleus | 9.52 | 16.12 |
| CDX68213 | Canola | nucleus, plastid | 12.12 | 16.05 |
| CDX78393 | Canola | nucleus | 17.1 | 15.99 |
| CDY68658 | Canola | nucleus | 16.23 | 15.99 |
| CDY27082 | Canola | cytosol | 8.23 | 15.97 |
| CDX97044 | Canola | nucleus | 17.53 | 15.88 |
| CDX88140 | Canola | nucleus | 16.23 | 15.56 |
| CDX69813 | Canola | mitochondrion | 17.75 | 15.38 |
| CDY22376 | Canola | nucleus | 20.13 | 15.12 |
| CDY40109 | Canola | nucleus | 6.06 | 15.05 |
| CDY17061 | Canola | nucleus | 19.48 | 14.85 |
| Zm00001d039015_P002 | Maize | cytosol | 12.99 | 14.67 |
| CDY43220 | Canola | nucleus | 19.26 | 14.61 |
| CDX71531 | Canola | nucleus | 20.13 | 14.6 |
| CDY37230 | Canola | nucleus | 18.4 | 14.43 |
| CDY62314 | Canola | nucleus | 18.4 | 14.36 |
| CDY24595 | Canola | nucleus | 9.74 | 14.29 |
| CDY25357 | Canola | nucleus | 9.74 | 14.06 |
| CDY33429 | Canola | nucleus | 9.74 | 13.64 |
| CDY42218 | Canola | nucleus | 9.74 | 13.47 |
| CDY47948 | Canola | nucleus | 8.01 | 7.36 |
| CDY69560 | Canola | nucleus | 7.58 | 6.88 |
| CDY36635 | Canola | nucleus | 7.79 | 6.04 |
Protein Annotations
| EnsemblPlants:CDY26006 | EnsemblPlantsGene:GSBRNA2T00033541001 | Gene3D:3.30.40.10 | GO:A0A078GKY3 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF48 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY26006 | ProteinID:CDY26006.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EF256D |
| UniProt:A0A078GKY3 | MapMan:35.1 | : | : | : | : |
Description
BnaC06g06180DBnaC06g06180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKY3]
Coordinates
chrLK032184:-:76906..80106
Molecular Weight (calculated)
51219.1 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.702
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQRNRSVDL EMEQQQHHQS QASLQPGPCL LVGSFPQPAM VANVPNSLQD NSTMFYGLPQ YHHHHHQPPP TNYYAPYVAF QAPPSQLPSS SSHGVSSDHF
101: MDHTPGAYKR KNAEGPQYLS TLAAPFNNAP ETVAPFGGAR SRPGAVTMNP VLPPPPPPHA PNGFIQGNYA GHHPYPPPGS IWYDQHLGRP DGSPSFWPHT
201: PYMQGSNIVA GSLESSRRNP APFMFPSPLN PRDHYYSHQH HPAPPPVQGV RGQSATLYPP MASSPSYRVP FRNFAPQNTI NNGPEMGPVQ PTGFRIYQHP
301: PPLAALRQHR GGVPRLRVMP DDEAAILEFG DFLGGSGNNH IDHHRDMRLD IEEMSYEELL ALSERIGTVN TGLPEEDVKN HLKTRTCSVI NLAEESSSSP
401: QTKDRETEPC TICQESFKNE EKIATLDCGH EYHAECLEKW LIVKNVCPIC KSEALVMEKR KV
101: MDHTPGAYKR KNAEGPQYLS TLAAPFNNAP ETVAPFGGAR SRPGAVTMNP VLPPPPPPHA PNGFIQGNYA GHHPYPPPGS IWYDQHLGRP DGSPSFWPHT
201: PYMQGSNIVA GSLESSRRNP APFMFPSPLN PRDHYYSHQH HPAPPPVQGV RGQSATLYPP MASSPSYRVP FRNFAPQNTI NNGPEMGPVQ PTGFRIYQHP
301: PPLAALRQHR GGVPRLRVMP DDEAAILEFG DFLGGSGNNH IDHHRDMRLD IEEMSYEELL ALSERIGTVN TGLPEEDVKN HLKTRTCSVI NLAEESSSSP
401: QTKDRETEPC TICQESFKNE EKIATLDCGH EYHAECLEKW LIVKNVCPIC KSEALVMEKR KV
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
Arabidopsis Description
At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.