Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023101.1-P | Field mustard | nucleus | 95.68 | 95.68 |
| CDX79718 | Canola | nucleus | 92.87 | 93.22 |
| CDY55435 | Canola | nucleus | 76.92 | 77.65 |
| CDY68424 | Canola | nucleus | 77.67 | 77.09 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 75.23 | 66.94 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 7.88 | 55.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 10.32 | 49.11 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 34.71 | 32.74 |
| CDY13429 | Canola | cytosol | 15.76 | 32.56 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 28.52 | 26.48 |
| CDX77848 | Canola | nucleus | 9.38 | 23.58 |
| CDY67192 | Canola | nucleus | 9.38 | 23.47 |
| CDX97032 | Canola | plastid | 14.26 | 22.69 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 21.58 | 22.46 |
| CDY13433 | Canola | nucleus | 19.51 | 22.32 |
| CDY63645 | Canola | nucleus | 19.32 | 22.29 |
| CDY71882 | Canola | plastid | 14.45 | 22.0 |
| CDY53710 | Canola | nucleus | 9.94 | 21.9 |
| CDX93901 | Canola | nucleus | 9.57 | 21.25 |
| CDY32973 | Canola | nucleus | 16.32 | 21.22 |
| CDY43590 | Canola | nucleus | 15.95 | 20.19 |
| CDY11092 | Canola | cytosol, plastid | 13.13 | 20.11 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 20.26 | 20.11 |
| Os05t0163400-03 | Rice | nucleus | 19.89 | 19.89 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 19.89 | 19.85 |
| CDY24110 | Canola | nucleus | 17.07 | 19.78 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 19.89 | 19.78 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 19.89 | 19.74 |
| CDX85750 | Canola | nucleus | 14.26 | 19.69 |
| EES00281 | Sorghum | nucleus | 18.95 | 19.61 |
| CDY17114 | Canola | nucleus | 19.51 | 19.59 |
| Os01t0159300-01 | Rice | nucleus | 18.39 | 19.56 |
| CDX68213 | Canola | nucleus, plastid | 12.76 | 19.48 |
| CDY26006 | Canola | nucleus | 16.89 | 19.48 |
| Zm00001d039769_P002 | Maize | cytosol | 20.07 | 19.42 |
| Zm00001d008649_P003 | Maize | cytosol | 19.14 | 19.35 |
| CDY25871 | Canola | nucleus | 17.26 | 19.25 |
| EES19093 | Sorghum | nucleus | 19.32 | 19.14 |
| CDY55839 | Canola | nucleus | 17.26 | 18.81 |
| CDX91624 | Canola | nucleus | 7.69 | 18.64 |
| CDX97629 | Canola | nucleus | 15.2 | 18.37 |
| CDX73013 | Canola | plastid | 12.2 | 18.31 |
| CDY68521 | Canola | nucleus | 15.01 | 18.14 |
| CDY60141 | Canola | plastid | 12.01 | 17.93 |
| CDY27083 | Canola | nucleus | 7.32 | 17.81 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 17.26 | 17.76 |
| CDX83878 | Canola | nucleus | 11.82 | 17.65 |
| CDX96741 | Canola | nucleus | 12.01 | 17.58 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 17.07 | 17.57 |
| CDY68658 | Canola | nucleus | 15.38 | 17.48 |
| CDY24595 | Canola | nucleus | 10.32 | 17.46 |
| CDX82450 | Canola | nucleus | 14.63 | 17.41 |
| CDY22376 | Canola | nucleus | 20.07 | 17.4 |
| CDY17061 | Canola | nucleus | 19.7 | 17.33 |
| CDY43220 | Canola | nucleus | 19.7 | 17.24 |
| CDX95473 | Canola | nucleus | 15.01 | 17.24 |
| CDY40109 | Canola | nucleus | 6.0 | 17.2 |
| CDY25357 | Canola | nucleus | 10.32 | 17.19 |
| CDX75805 | Canola | cytosol | 14.26 | 17.16 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 16.7 | 17.15 |
| CDY42218 | Canola | nucleus | 10.69 | 17.07 |
| CDX97044 | Canola | nucleus | 16.32 | 17.06 |
| CDY33429 | Canola | nucleus | 10.51 | 16.97 |
| CDX88140 | Canola | nucleus | 15.2 | 16.8 |
| CDX78393 | Canola | nucleus | 15.57 | 16.8 |
| CDX71531 | Canola | nucleus | 19.89 | 16.64 |
| CDY37230 | Canola | nucleus | 18.39 | 16.64 |
| CDY31919 | Canola | nucleus | 8.44 | 16.48 |
| CDY00512 | Canola | nucleus | 8.44 | 16.48 |
| CDY62314 | Canola | nucleus | 18.2 | 16.39 |
| CDX70363 | Canola | nucleus | 14.45 | 15.84 |
| CDX69813 | Canola | mitochondrion | 15.76 | 15.76 |
| CDX91625 | Canola | cytosol | 6.38 | 14.85 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 16.32 | 14.77 |
| CDY27082 | Canola | cytosol | 6.38 | 14.29 |
| CDY47948 | Canola | nucleus | 10.13 | 10.74 |
| CDY69560 | Canola | nucleus | 7.88 | 8.25 |
| CDY36635 | Canola | nucleus | 7.32 | 6.54 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078I9E4 |
| UniProt:A0A078I9E4 | EnsemblPlants:CDY46757 | ProteinID:CDY46757 | ProteinID:CDY46757.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00086081001 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF47 | SMART:SM00184 | SMART:SM00744 |
| SUPFAM:SSF57850 | UniParc:UPI0004EF16D5 | InterPro:Znf_RING | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaA03g17010DBnaA03g17010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9E4]
Coordinates
chrLK032684:-:97451..100476
Molecular Weight (calculated)
59209.7 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.889
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHRHFPGSS QFFDDDEHDQ GWNHIHPEHP YTSLERSGTS ENNRPHAYLA ENLLSEGVPV SSHWNSSIGP SAYTAPGHGA ERPHYNPGTS APPHVPFMSS
101: AVATFSAPHE TYVTSASASN CNSHTWPNDS YADLPMENMR GSLKRKAPYD ASNYEMGSSS HYHGDRASSD MHFPSELHMG KSITHDHDPH YMPWLMDPTH
201: RSNNLSIRGE SSSRNVRSRP ILNLETGFNT HPTHHNVEHP TSGQFPGQAS NRDKDWNYPR LSPVPGDING FSPETSSFLP ARSVVNNTSG DTSGYHQGIT
301: GNRNSAASHC FPGTSTQSAS SSRFSHRSTP TYRASSNGLR LGHVASSSAD RSHFVNQTYP SRHLRPPPHI SWRSSGRPGR RRSSYERFQP PFDEAALHER
401: FSSQGFMVVD HHLQHGSRNM LDHHRDMRLD IDDMTYEELL ALGERIGSVN TGLSNNAISS CLSETAYYPL YQTDEQRKCA ICLEEYVEGE ELGELKGCGH
501: DYHGGCIKKW LSMKNSCPIC KAPAIPDASS KNP
101: AVATFSAPHE TYVTSASASN CNSHTWPNDS YADLPMENMR GSLKRKAPYD ASNYEMGSSS HYHGDRASSD MHFPSELHMG KSITHDHDPH YMPWLMDPTH
201: RSNNLSIRGE SSSRNVRSRP ILNLETGFNT HPTHHNVEHP TSGQFPGQAS NRDKDWNYPR LSPVPGDING FSPETSSFLP ARSVVNNTSG DTSGYHQGIT
301: GNRNSAASHC FPGTSTQSAS SSRFSHRSTP TYRASSNGLR LGHVASSSAD RSHFVNQTYP SRHLRPPPHI SWRSSGRPGR RRSSYERFQP PFDEAALHER
401: FSSQGFMVVD HHLQHGSRNM LDHHRDMRLD IDDMTYEELL ALGERIGSVN TGLSNNAISS CLSETAYYPL YQTDEQRKCA ICLEEYVEGE ELGELKGCGH
501: DYHGGCIKKW LSMKNSCPIC KAPAIPDASS KNP
001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.