Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040450.1-P | Field mustard | nucleus | 97.08 | 96.28 |
| CDY53710 | Canola | nucleus | 97.08 | 96.28 |
| AT3G63530.2 | Thale cress | cytosol | 87.08 | 84.27 |
| KRH20832 | Soybean | nucleus | 55.42 | 53.85 |
| KRH27487 | Soybean | cytosol, nucleus, plastid | 55.0 | 53.44 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 53.75 | 52.23 |
| PGSC0003DMT400017553 | Potato | nucleus | 42.92 | 42.39 |
| CDX77848 | Canola | nucleus | 24.58 | 27.83 |
| CDY67192 | Canola | nucleus | 24.58 | 27.7 |
| Solyc01g087060.2.1 | Tomato | nucleus | 42.5 | 27.57 |
| CDY27083 | Canola | nucleus | 23.33 | 25.57 |
| CDX91624 | Canola | nucleus | 22.92 | 25.0 |
| CDY00512 | Canola | nucleus | 25.42 | 22.34 |
| CDY31919 | Canola | nucleus | 25.0 | 21.98 |
| CDY24595 | Canola | nucleus | 28.75 | 21.9 |
| CDY25357 | Canola | nucleus | 28.33 | 21.25 |
| CDY42218 | Canola | nucleus | 29.17 | 20.96 |
| CDY33429 | Canola | nucleus | 28.75 | 20.91 |
| CDX91625 | Canola | cytosol | 19.17 | 20.09 |
| CDY27082 | Canola | cytosol | 17.92 | 18.07 |
| CDY13429 | Canola | cytosol | 15.83 | 14.73 |
| CDX97032 | Canola | plastid | 18.75 | 13.43 |
| CDY71882 | Canola | plastid | 18.75 | 12.86 |
| CDX85750 | Canola | nucleus | 19.17 | 11.92 |
| CDY68521 | Canola | nucleus | 21.67 | 11.79 |
| CDX97629 | Canola | nucleus | 21.25 | 11.56 |
| CDY60141 | Canola | plastid | 17.08 | 11.48 |
| CDY32973 | Canola | nucleus | 19.58 | 11.46 |
| CDY43590 | Canola | nucleus | 19.58 | 11.16 |
| CDY24110 | Canola | nucleus | 21.25 | 11.09 |
| CDY26006 | Canola | nucleus | 21.25 | 11.04 |
| CDY68658 | Canola | nucleus | 21.25 | 10.87 |
| CDY40109 | Canola | nucleus | 8.33 | 10.75 |
| CDX82450 | Canola | nucleus | 20.0 | 10.71 |
| CDX73013 | Canola | plastid | 15.83 | 10.7 |
| CDX83878 | Canola | nucleus | 15.83 | 10.64 |
| CDX75805 | Canola | cytosol | 19.58 | 10.61 |
| CDX68213 | Canola | nucleus, plastid | 15.42 | 10.6 |
| CDX96741 | Canola | nucleus | 15.83 | 10.44 |
| CDX88140 | Canola | nucleus | 20.83 | 10.37 |
| CDY11092 | Canola | cytosol, plastid | 15.0 | 10.34 |
| CDX95473 | Canola | nucleus | 19.58 | 10.13 |
| CDX78393 | Canola | nucleus | 20.83 | 10.12 |
| CDY25871 | Canola | nucleus | 20.0 | 10.04 |
| CDY55839 | Canola | nucleus | 20.0 | 9.82 |
| CDX97044 | Canola | nucleus | 20.83 | 9.8 |
| CDY17114 | Canola | nucleus | 21.67 | 9.79 |
| CDX70363 | Canola | nucleus | 19.58 | 9.67 |
| CDX79718 | Canola | nucleus | 21.25 | 9.6 |
| CDY46757 | Canola | nucleus | 21.25 | 9.57 |
| CDY55435 | Canola | nucleus | 20.83 | 9.47 |
| CDY68424 | Canola | nucleus | 20.83 | 9.31 |
| CDX69813 | Canola | mitochondrion | 20.42 | 9.19 |
| CDY63645 | Canola | nucleus | 17.08 | 8.87 |
| CDY13433 | Canola | nucleus | 17.08 | 8.8 |
| CDY22376 | Canola | nucleus | 22.08 | 8.62 |
| CDY17061 | Canola | nucleus | 21.67 | 8.58 |
| CDY43220 | Canola | nucleus | 21.67 | 8.54 |
| CDX71531 | Canola | nucleus | 21.67 | 8.16 |
| CDY37230 | Canola | nucleus | 18.33 | 7.47 |
| CDY62314 | Canola | nucleus | 18.33 | 7.43 |
| CDY47948 | Canola | nucleus | 4.58 | 2.19 |
| CDY69560 | Canola | nucleus | 3.33 | 1.57 |
| CDY36635 | Canola | nucleus | 3.75 | 1.51 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078DX78 |
| InterPro:BB | EnsemblPlants:CDX93901 | ProteinID:CDX93901 | ProteinID:CDX93901.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0046621 | EnsemblPlantsGene:GSBRNA2T00156719001 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDE02F | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : |
Description
BnaC04g20600D
Coordinates
chrLK031878:+:537689..538931
Molecular Weight (calculated)
27217.3 Da
IEP (calculated)
4.573
GRAVY (calculated)
-0.692
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDRPDSHY TETGFPYAAS YMDFYGGAAQ DDPLNYAHAG TMHPPHQDSL YWTMNTNAYK FGFSGSDNAA FYGSYDLNDH LSRMSIGRTN WEYHLPLVNV
101: DESVPRSGDT DDHSDAEECI AIEHDPESPQ VSWQDDIDPD TMTYEELIEL GEAVGSESRG LSQELIETLP TRKYKFGSFF SRKRAGDRCV ICQLKYKIGE
201: KQMNLPCKHV YHSECISKWL NINKICPVCN SEVFGEPSIH
101: DESVPRSGDT DDHSDAEECI AIEHDPESPQ VSWQDDIDPD TMTYEELIEL GEAVGSESRG LSQELIETLP TRKYKFGSFF SRKRAGDRCV ICQLKYKIGE
201: KQMNLPCKHV YHSECISKWL NINKICPVCN SEVFGEPSIH
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Arabidopsis Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.