Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53710 | Canola | nucleus | 86.29 | 88.43 |
| Bra040450.1-P | Field mustard | nucleus | 86.29 | 88.43 |
| CDX93901 | Canola | nucleus | 84.27 | 87.08 |
| VIT_13s0064g01030.t01 | Wine grape | nucleus | 54.84 | 55.06 |
| KRH20832 | Soybean | nucleus | 54.03 | 54.25 |
| KRH27487 | Soybean | cytosol, nucleus, plastid | 53.63 | 53.85 |
| PGSC0003DMT400017553 | Potato | nucleus | 44.76 | 45.68 |
| Solyc01g087060.2.1 | Tomato | nucleus | 44.35 | 29.73 |
| AT5G52155.1 | Thale cress | nucleus | 19.35 | 26.37 |
| AT3G47180.1 | Thale cress | cytosol | 21.37 | 25.24 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 19.76 | 24.5 |
| AT3G19910.1 | Thale cress | nucleus | 29.03 | 21.18 |
| AT5G52140.1 | Thale cress | nucleus | 22.58 | 20.0 |
| AT4G00070.1 | Thale cress | nucleus | 10.89 | 15.08 |
| AT1G36950.1 | Thale cress | cytosol | 10.89 | 11.95 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 16.94 | 11.44 |
| AT5G10650.2 | Thale cress | nucleus | 22.58 | 10.67 |
| AT1G17970.1 | Thale cress | nucleus | 15.73 | 10.6 |
| AT1G53190.1 | Thale cress | nucleus | 20.16 | 10.12 |
| AT3G15070.1 | Thale cress | nucleus | 19.76 | 10.08 |
| AT5G24870.2 | Thale cress | nucleus | 20.16 | 9.62 |
| AT4G31450.2 | Thale cress | nucleus | 17.74 | 8.85 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 21.37 | 8.85 |
| AT1G45180.3 | Thale cress | nucleus | 20.97 | 8.06 |
| AT5G42940.1 | Thale cress | nucleus | 20.56 | 7.38 |
| AT4G34040.1 | Thale cress | nucleus | 18.55 | 6.91 |
| AT2G15530.4 | Thale cress | nucleus | 18.95 | 6.03 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:825528 | UniProt:A0A178VG02 | ProteinID:AEE80499.1 | ProteinID:AEE80500.1 |
| EMBL:AK227673 | EMBL:AK318710 | ArrayExpress:AT3G63530 | EnsemblPlantsGene:AT3G63530 | RefSeq:AT3G63530 | TAIR:AT3G63530 |
| RefSeq:AT3G63530-TAIR-G | EnsemblPlants:AT3G63530.2 | TAIR:AT3G63530.2 | InterPro:BB | Symbol:BB | EMBL:BT010197 |
| ProteinID:CAD32249.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008285 |
| GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031624 | GO:GO:0040007 | GO:GO:0043161 | GO:GO:0046621 | GO:GO:0046872 |
| GO:GO:0048437 | GO:GO:0051865 | GO:GO:0061630 | GO:GO:1900057 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_001030922.1 | RefSeq:NP_680148.1 | ProteinID:OAP05249.1 | PFAM:PF13639 | PO:PO:0000293 | PFscan:PS50089 |
| PANTHER:PTHR14155 | PANTHER:PTHR14155:SF75 | UniProt:Q8L649 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A6439 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
BBBB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VG02]
Coordinates
chr3:-:23456055..23458732
Molecular Weight (calculated)
27984.2 Da
IEP (calculated)
4.472
GRAVY (calculated)
-0.702
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDNRPVED AHYTETGFPY AATGSYMDFY GGAAQGPLNY DHAATMHPQD NLYWTMNTNA YKFGFSGSDN ASFYGSYDMN DHLSRMSIGR TNWDYHPMVN
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
101: VADDPENTVA RSVQIGDTDE HSEAEECIAN EHDPDSPQVS WQDDIDPDTM TYEELVELGE AVGTESRGLS QELIETLPTK KYKFGSIFSR KRAGERCVIC
201: QLKYKIGERQ MNLPCKHVYH SECISKWLSI NKVCPVCNSE VFGEPSIH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.