Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67192 | Canola | nucleus | 82.38 | 81.22 |
| Bra019499.1-P | Field mustard | nucleus | 63.33 | 81.1 |
| CDX77848 | Canola | nucleus | 80.95 | 80.19 |
| KRH16389 | Soybean | nucleus | 43.81 | 44.88 |
| PGSC0003DMT400020398 | Potato | nucleus | 37.14 | 44.07 |
| KRH17980 | Soybean | nucleus | 41.9 | 43.35 |
| Solyc12g010500.1.1 | Tomato | nucleus | 36.67 | 43.02 |
| KRH64669 | Soybean | nucleus | 40.95 | 42.57 |
| VIT_18s0001g02280.t01 | Wine grape | nucleus | 40.95 | 41.55 |
| KRH53246 | Soybean | nucleus | 36.19 | 41.53 |
| AT3G63530.2 | Thale cress | cytosol | 25.24 | 21.37 |
| AT3G19910.1 | Thale cress | nucleus | 27.14 | 16.76 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 15.24 | 16.0 |
| AT5G52140.1 | Thale cress | nucleus | 20.0 | 15.0 |
| AT4G00070.1 | Thale cress | nucleus | 12.38 | 14.53 |
| AT5G52155.1 | Thale cress | nucleus | 10.95 | 12.64 |
| AT1G36950.1 | Thale cress | cytosol | 12.38 | 11.5 |
| AT1G17970.1 | Thale cress | nucleus | 18.1 | 10.33 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 17.14 | 9.81 |
| AT3G15070.1 | Thale cress | nucleus | 20.95 | 9.05 |
| AT5G10650.2 | Thale cress | nucleus | 22.38 | 8.95 |
| AT1G53190.1 | Thale cress | nucleus | 20.48 | 8.7 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 24.76 | 8.68 |
| AT5G24870.2 | Thale cress | nucleus | 21.43 | 8.65 |
| AT4G31450.2 | Thale cress | nucleus | 19.52 | 8.25 |
| AT1G45180.3 | Thale cress | nucleus | 23.81 | 7.75 |
| AT5G42940.1 | Thale cress | nucleus | 24.29 | 7.38 |
| AT4G34040.1 | Thale cress | nucleus | 22.38 | 7.06 |
| AT2G15530.4 | Thale cress | nucleus | 22.38 | 6.03 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:823871 | ProteinID:AEE78252.1 | ArrayExpress:AT3G47180 | EnsemblPlantsGene:AT3G47180 |
| RefSeq:AT3G47180 | TAIR:AT3G47180 | RefSeq:AT3G47180-TAIR-G | EnsemblPlants:AT3G47180.1 | TAIR:AT3G47180.1 | Unigene:At.35834 |
| EMBL:BT011767 | EMBL:BT012388 | ProteinID:CAB61964.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_190302.1 |
| PFAM:PF13639 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 | PFscan:PS50089 | PANTHER:PTHR14155 |
| PANTHER:PTHR14155:SF112 | UniProt:Q9SD55 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A2CF2 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
At3g47180 [Source:UniProtKB/TrEMBL;Acc:Q9SD55]
Coordinates
chr3:-:17372731..17373547
Molecular Weight (calculated)
24023.2 Da
IEP (calculated)
3.665
GRAVY (calculated)
-0.710
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNQEEEPKQ PPNKLPDLAL FEQANSEVAL AASQANSHFA HAMHDSSPSM ISMIESDEES EDEEEINENY YEYFDSNGFG VDEDEINEFL EDQESNSNLE
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
101: EEDDFLEEED EIDPDQLSYE ELIALGDFIG VENRGLTPIE ISTCLNASTY VFSHNKNEID RCVVCQMEFE ERESLVVLRP CDHPYHSECI TKWLETKKIC
201: PICCSEPSVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.