Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79718 | Canola | nucleus | 68.78 | 77.59 |
| Bra023101.1-P | Field mustard | nucleus | 68.95 | 77.49 |
| CDY68424 | Canola | nucleus | 69.28 | 77.28 |
| CDY55435 | Canola | nucleus | 68.11 | 77.27 |
| Bra017205.1-P | Field mustard | nucleus | 68.45 | 76.35 |
| CDY46757 | Canola | nucleus | 66.94 | 75.23 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 7.51 | 59.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.52 | 50.89 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 32.89 | 34.87 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 27.21 | 28.4 |
| AT3G47180.1 | Thale cress | cytosol | 8.68 | 24.76 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 19.87 | 23.24 |
| AT1G53190.1 | Thale cress | nucleus | 18.03 | 21.86 |
| AT4G31450.2 | Thale cress | nucleus | 17.86 | 21.53 |
| AT3G63530.2 | Thale cress | cytosol | 8.85 | 21.37 |
| AT4G00070.1 | Thale cress | nucleus | 6.34 | 21.23 |
| Os01t0159300-01 | Rice | nucleus | 17.03 | 20.36 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 17.86 | 19.93 |
| EES00281 | Sorghum | nucleus | 17.03 | 19.81 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 17.7 | 19.74 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 17.53 | 19.66 |
| AT1G73760.1 | Thale cress | nucleus, plastid | 12.02 | 19.62 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 17.53 | 19.59 |
| Os05t0163400-03 | Rice | nucleus | 17.36 | 19.51 |
| Zm00001d008649_P003 | Maize | cytosol | 17.03 | 19.35 |
| AT3G15070.1 | Thale cress | nucleus | 15.36 | 18.93 |
| Zm00001d039769_P002 | Maize | cytosol | 17.36 | 18.87 |
| EES19093 | Sorghum | nucleus | 16.36 | 18.22 |
| AT1G45180.3 | Thale cress | nucleus | 19.53 | 18.14 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 15.36 | 17.76 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 15.36 | 17.76 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 15.19 | 17.53 |
| AT1G17970.1 | Thale cress | nucleus | 10.18 | 16.58 |
| AT5G24870.2 | Thale cress | nucleus | 14.36 | 16.54 |
| AT5G42940.1 | Thale cress | nucleus | 19.03 | 16.5 |
| AT5G52155.1 | Thale cress | nucleus | 5.01 | 16.48 |
| AT5G10650.2 | Thale cress | nucleus | 14.36 | 16.38 |
| AT1G36950.1 | Thale cress | cytosol | 6.18 | 16.37 |
| AT5G52140.1 | Thale cress | nucleus | 7.35 | 15.71 |
| AT5G52150.1 | Thale cress | cytosol, nucleus, peroxisome | 5.18 | 15.5 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 15.19 | 15.45 |
| AT4G34040.1 | Thale cress | nucleus | 16.36 | 14.71 |
| AT3G19910.1 | Thale cress | nucleus | 7.85 | 13.82 |
| AT2G15530.4 | Thale cress | nucleus | 16.19 | 12.44 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:818291 | ProteinID:AEC09359.1 | ArrayExpress:AT2G37150 | EnsemblPlantsGene:AT2G37150 |
| RefSeq:AT2G37150 | TAIR:AT2G37150 | RefSeq:AT2G37150-TAIR-G | EnsemblPlants:AT2G37150.3 | TAIR:AT2G37150.3 | Unigene:At.28350 |
| UniProt:F4IQ07 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_001189695.1 | PFAM:PF13639 | PO:PO:0000013 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF47 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0001E92D81 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
Coordinates
chr2:-:15603581..15607600
Molecular Weight (calculated)
67157.1 Da
IEP (calculated)
7.117
GRAVY (calculated)
-0.845
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVPHVSPLG LVAGLSLMYS DLRIVLWTFL VDWESKANLN SSHLEVILIH RGLMGHRHFL GSSQFFDDEH DQGWNHTHPE HPYSSQATSG TSENRSHVYP
101: AENMLNEGMP VSSHWNSSPG PNAYTDSGHS VERPHYNPGV SGPSHDPSVN STVPTFSAPH ENYVTFASSS SYNSQTWSNA SYVDHQSMES VRGAQKRKRP
201: CPSSIYEMGS SSQYHGDRTP ADTHFPSELH LGKSITHDHD PHYMPWLMNP TYRSNNLSIR GESSSRNVRS RPTLDSETSL GRNNLPRSLS LDSHSTHHHS
301: VDHYGSGQFP GQTSHGNKDW NCARLSPVLR DINGFSPETN NFLPARSVVN SLSVNTSGYH HHELTGNRNP TVSHGVPGTS TLSTSSSRFS HRSTSTYRSS
401: SHGSRSGHVA SSSGDRSHLV TETYPSRHLR PPPHISWRSG DRPGRRRSSY ERFQPPFDEV ALHERFSSEE FMVEDRQPQY YGSRNMLDHH RDMRLDIDNM
501: SYEELLDLGE RIGSVNTGLS DSAISSCLLA TMYYPSYQTE EQRKCAICLE EYKEKEELGE VKGCGHDYHG RCIKKWLSMK NSCPICKSPA LPDASKNSS
101: AENMLNEGMP VSSHWNSSPG PNAYTDSGHS VERPHYNPGV SGPSHDPSVN STVPTFSAPH ENYVTFASSS SYNSQTWSNA SYVDHQSMES VRGAQKRKRP
201: CPSSIYEMGS SSQYHGDRTP ADTHFPSELH LGKSITHDHD PHYMPWLMNP TYRSNNLSIR GESSSRNVRS RPTLDSETSL GRNNLPRSLS LDSHSTHHHS
301: VDHYGSGQFP GQTSHGNKDW NCARLSPVLR DINGFSPETN NFLPARSVVN SLSVNTSGYH HHELTGNRNP TVSHGVPGTS TLSTSSSRFS HRSTSTYRSS
401: SHGSRSGHVA SSSGDRSHLV TETYPSRHLR PPPHISWRSG DRPGRRRSSY ERFQPPFDEV ALHERFSSEE FMVEDRQPQY YGSRNMLDHH RDMRLDIDNM
501: SYEELLDLGE RIGSVNTGLS DSAISSCLLA TMYYPSYQTE EQRKCAICLE EYKEKEELGE VKGCGHDYHG RCIKKWLSMK NSCPICKSPA LPDASKNSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.