Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46757 | Canola | nucleus | 93.22 | 92.87 |
| CDY55435 | Canola | nucleus | 78.72 | 79.17 |
| CDY68424 | Canola | nucleus | 79.28 | 78.4 |
| AT2G37150.3 | Thale cress | endoplasmic reticulum, extracellular | 77.59 | 68.78 |
| VIT_16s0022g00290.t01 | Wine grape | nucleus | 8.1 | 56.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 10.17 | 48.21 |
| VIT_13s0019g04100.t01 | Wine grape | extracellular | 35.97 | 33.81 |
| CDY13429 | Canola | cytosol | 15.44 | 31.78 |
| GSMUA_Achr5P08460_001 | Banana | nucleus | 29.0 | 26.83 |
| CDX77848 | Canola | nucleus | 9.79 | 24.53 |
| CDY67192 | Canola | nucleus | 9.79 | 24.41 |
| CDX97032 | Canola | plastid | 14.5 | 22.99 |
| CDY63645 | Canola | nucleus | 19.77 | 22.73 |
| CDY13433 | Canola | nucleus | 19.59 | 22.32 |
| CDY71882 | Canola | plastid | 14.69 | 22.29 |
| CDY53710 | Canola | nucleus | 9.98 | 21.9 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome | 21.09 | 21.88 |
| CDX93901 | Canola | nucleus | 9.6 | 21.25 |
| CDY32973 | Canola | nucleus | 16.38 | 21.22 |
| Os01t0159300-01 | Rice | nucleus | 19.77 | 20.96 |
| CDY26006 | Canola | nucleus | 18.08 | 20.78 |
| CDY11092 | Canola | cytosol, plastid | 13.56 | 20.69 |
| CDY24110 | Canola | nucleus | 17.89 | 20.65 |
| EES00281 | Sorghum | nucleus | 19.77 | 20.39 |
| CDY25871 | Canola | nucleus | 18.27 | 20.29 |
| CDY43590 | Canola | nucleus | 16.01 | 20.19 |
| Zm00001d008649_P003 | Maize | cytosol | 19.96 | 20.11 |
| Os05t0163400-03 | Rice | nucleus | 20.15 | 20.07 |
| CDX68213 | Canola | nucleus, plastid | 13.18 | 20.06 |
| CDY17114 | Canola | nucleus | 19.96 | 19.96 |
| CDX97629 | Canola | nucleus | 16.57 | 19.95 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 20.15 | 19.93 |
| CDY55839 | Canola | nucleus | 18.27 | 19.84 |
| Zm00001d039769_P002 | Maize | cytosol | 20.53 | 19.78 |
| TraesCS1A01G107600.1 | Wheat | nucleus | 19.96 | 19.74 |
| CDY68521 | Canola | nucleus | 16.38 | 19.73 |
| CDX85750 | Canola | nucleus | 14.31 | 19.69 |
| TraesCS1B01G129600.1 | Wheat | nucleus | 19.77 | 19.66 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 19.77 | 19.59 |
| CDX73013 | Canola | plastid | 12.81 | 19.15 |
| EES19093 | Sorghum | nucleus | 19.4 | 19.14 |
| CDY60141 | Canola | plastid | 12.62 | 18.77 |
| CDX82450 | Canola | nucleus | 15.82 | 18.75 |
| TraesCS3B01G120600.2 | Wheat | cytosol | 18.08 | 18.53 |
| CDX75805 | Canola | cytosol | 15.44 | 18.51 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 17.89 | 18.34 |
| CDX83878 | Canola | nucleus | 12.05 | 17.93 |
| TraesCS3A01G103000.1 | Wheat | nucleus | 17.51 | 17.92 |
| CDX96741 | Canola | nucleus | 12.24 | 17.86 |
| CDX91624 | Canola | nucleus | 7.34 | 17.73 |
| CDY17061 | Canola | nucleus | 19.96 | 17.49 |
| CDY68658 | Canola | nucleus | 15.44 | 17.48 |
| CDX95473 | Canola | nucleus | 15.25 | 17.46 |
| CDY43220 | Canola | nucleus | 19.96 | 17.41 |
| CDX97044 | Canola | nucleus | 16.57 | 17.25 |
| CDY22376 | Canola | nucleus | 19.96 | 17.24 |
| CDY40109 | Canola | nucleus | 6.03 | 17.2 |
| CDX78393 | Canola | nucleus | 15.82 | 17.0 |
| CDY27083 | Canola | nucleus | 6.97 | 16.89 |
| CDY24595 | Canola | nucleus | 9.98 | 16.83 |
| CDX88140 | Canola | nucleus | 15.25 | 16.8 |
| CDY25357 | Canola | nucleus | 9.98 | 16.56 |
| CDY37230 | Canola | nucleus | 18.27 | 16.47 |
| CDY42218 | Canola | nucleus | 10.36 | 16.47 |
| CDY33429 | Canola | nucleus | 10.17 | 16.36 |
| CDY62314 | Canola | nucleus | 18.08 | 16.22 |
| CDX71531 | Canola | nucleus | 19.4 | 16.17 |
| CDY31919 | Canola | nucleus | 8.29 | 16.12 |
| CDY00512 | Canola | nucleus | 8.29 | 16.12 |
| CDX69813 | Canola | mitochondrion | 16.01 | 15.95 |
| CDX70363 | Canola | nucleus | 14.31 | 15.64 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 17.14 | 15.45 |
| CDX91625 | Canola | cytosol | 6.4 | 14.85 |
| CDY27082 | Canola | cytosol | 6.4 | 14.29 |
| CDY47948 | Canola | nucleus | 10.36 | 10.93 |
| CDY69560 | Canola | nucleus | 7.34 | 7.66 |
| CDY36635 | Canola | nucleus | 6.78 | 6.04 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078CX52 |
| EnsemblPlants:CDX79718 | ProteinID:CDX79718 | ProteinID:CDX79718.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| EnsemblPlantsGene:GSBRNA2T00132531001 | InterPro:IPR001841 | InterPro:IPR011016 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF47 | SMART:SM00184 | SMART:SM00744 | SUPFAM:SSF57850 | UniParc:UPI0004EDD155 |
| InterPro:Znf_RING | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC03g20540D
Coordinates
chrLK031818:-:1882355..1886181
Molecular Weight (calculated)
59070.4 Da
IEP (calculated)
6.826
GRAVY (calculated)
-0.947
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHRHFPGSS QFFDDDEHDQ GWNHMHPEHP YTSLERSGTS ENNRPHAYLA ENLLSEGVPV SSHWNSSTGP NAYTAPGHGV ERPHYNPGTS GPSHVPFMSS
101: AVSAPHETYV TSASASNCNS HTWSNDSYVD PPIENMRGAL KRKAPYDASN YEMGSSSQYH GDRASSDMHF PSELHMGKSI THDHDPHYMP WPMDPTHRSN
201: NLSIRGESSS RNVRSRPTLD LETGLDSHPT HHNVEHPSSG QFPGQASHRD KDWWNCPRLS PVPGDINGFS PETSNFLPGR SVVNNTSGDT SGYHQGITGN
301: RNSTASHCFP GTSTQSPSSS RFSHRSTPTY RASSNGLRLG HVASSSADRS HFVSETYPSR HLRPPPHISW RSNGRPGRRR SSYERFQPHI DEAALHERFS
401: SQGFMVVDHH LQHGSRNMLD HHRDMRLDID DMTYEELLAL GERIGSVNTG LSNNSISSCL SETTYYPLYQ TDELRKCAIC LEEYVEGEEL GELKGCGHDY
501: HGGCIKKWLS MKNSCPICKS PALPDASSKN P
101: AVSAPHETYV TSASASNCNS HTWSNDSYVD PPIENMRGAL KRKAPYDASN YEMGSSSQYH GDRASSDMHF PSELHMGKSI THDHDPHYMP WPMDPTHRSN
201: NLSIRGESSS RNVRSRPTLD LETGLDSHPT HHNVEHPSSG QFPGQASHRD KDWWNCPRLS PVPGDINGFS PETSNFLPGR SVVNNTSGDT SGYHQGITGN
301: RNSTASHCFP GTSTQSPSSS RFSHRSTPTY RASSNGLRLG HVASSSADRS HFVSETYPSR HLRPPPHISW RSNGRPGRRR SSYERFQPHI DEAALHERFS
401: SQGFMVVDHH LQHGSRNMLD HHRDMRLDID DMTYEELLAL GERIGSVNTG LSNNSISSCL SETTYYPLYQ TDELRKCAIC LEEYVEGEEL GELKGCGHDY
501: HGGCIKKWLS MKNSCPICKS PALPDASSKN P
001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.