Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014043.1-P | Field mustard | nucleus | 91.3 | 96.53 |
| CDY17061 | Canola | nucleus | 95.89 | 96.37 |
| CDY17114 | Canola | nucleus | 57.8 | 66.29 |
| KRH05664 | Soybean | nucleus | 12.97 | 65.29 |
| AT1G45180.3 | Thale cress | nucleus | 67.16 | 63.41 |
| CDY47948 | Canola | nucleus | 48.28 | 58.45 |
| CDY32973 | Canola | nucleus | 37.6 | 55.85 |
| CDY43590 | Canola | nucleus | 38.59 | 55.82 |
| CDX71531 | Canola | nucleus | 52.71 | 50.39 |
| CDY22376 | Canola | nucleus | 50.41 | 49.92 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 41.71 | 34.6 |
| Solyc04g078680.2.1 | Tomato | nucleus | 38.42 | 32.41 |
| Solyc12g088740.1.1 | Tomato | nucleus | 34.48 | 30.3 |
| PGSC0003DMT400039849 | Potato | nucleus | 34.48 | 30.3 |
| KRH52013 | Soybean | nucleus | 35.14 | 30.23 |
| PGSC0003DMT400020528 | Potato | nucleus | 33.99 | 30.04 |
| KRH61306 | Soybean | nucleus | 31.2 | 29.05 |
| KRH61311 | Soybean | nucleus | 34.48 | 28.61 |
| CDY62314 | Canola | nucleus | 25.45 | 26.18 |
| CDY37230 | Canola | nucleus | 25.29 | 26.15 |
| CDY13429 | Canola | cytosol | 11.0 | 25.97 |
| CDY67192 | Canola | nucleus | 8.37 | 23.94 |
| CDX77848 | Canola | nucleus | 8.21 | 23.58 |
| CDY40109 | Canola | nucleus | 6.9 | 22.58 |
| CDX93901 | Canola | nucleus | 8.54 | 21.67 |
| CDY60141 | Canola | plastid | 12.64 | 21.57 |
| CDY11092 | Canola | cytosol, plastid | 12.15 | 21.26 |
| CDY53710 | Canola | nucleus | 8.37 | 21.07 |
| CDX97032 | Canola | plastid | 11.49 | 20.9 |
| CDX73013 | Canola | plastid | 12.15 | 20.85 |
| CDX85750 | Canola | nucleus | 13.14 | 20.73 |
| CDX68213 | Canola | nucleus, plastid | 11.82 | 20.63 |
| CDX83878 | Canola | nucleus | 11.99 | 20.45 |
| CDX96741 | Canola | nucleus | 12.15 | 20.33 |
| CDY71882 | Canola | plastid | 11.66 | 20.29 |
| CDX79718 | Canola | nucleus | 17.41 | 19.96 |
| CDY46757 | Canola | nucleus | 17.24 | 19.7 |
| CDY26006 | Canola | nucleus | 14.61 | 19.26 |
| CDY25871 | Canola | nucleus | 15.11 | 19.25 |
| CDY55435 | Canola | nucleus | 16.58 | 19.13 |
| CDY68424 | Canola | nucleus | 16.58 | 18.81 |
| CDY24110 | Canola | nucleus | 14.12 | 18.7 |
| CDY55839 | Canola | nucleus | 14.94 | 18.61 |
| CDX75805 | Canola | cytosol | 13.46 | 18.51 |
| CDX82450 | Canola | nucleus | 13.3 | 18.08 |
| CDX91624 | Canola | nucleus | 6.4 | 17.73 |
| CDY68658 | Canola | nucleus | 13.63 | 17.7 |
| CDX91625 | Canola | cytosol | 6.57 | 17.47 |
| CDX97629 | Canola | nucleus | 12.64 | 17.46 |
| CDY27083 | Canola | nucleus | 6.24 | 17.35 |
| CDY63645 | Canola | nucleus | 13.14 | 17.32 |
| CDX88140 | Canola | nucleus | 13.63 | 17.22 |
| CDX78393 | Canola | nucleus | 13.79 | 17.0 |
| CDY69560 | Canola | nucleus | 14.12 | 16.9 |
| CDX69813 | Canola | mitochondrion | 14.61 | 16.7 |
| CDX70363 | Canola | nucleus | 13.3 | 16.67 |
| CDX95473 | Canola | nucleus | 12.48 | 16.38 |
| CDY68521 | Canola | nucleus | 11.82 | 16.33 |
| CDY13433 | Canola | nucleus | 12.48 | 16.31 |
| CDX97044 | Canola | nucleus | 13.63 | 16.27 |
| CDY27082 | Canola | cytosol | 6.24 | 15.97 |
| CDY31919 | Canola | nucleus | 7.06 | 15.75 |
| CDY00512 | Canola | nucleus | 6.9 | 15.38 |
| CDY42218 | Canola | nucleus | 8.21 | 14.97 |
| CDY33429 | Canola | nucleus | 8.05 | 14.85 |
| CDY24595 | Canola | nucleus | 7.55 | 14.6 |
| CDY25357 | Canola | nucleus | 7.55 | 14.38 |
| CDY36635 | Canola | nucleus | 13.14 | 13.42 |
Protein Annotations
| EnsemblPlants:CDY43220 | EnsemblPlantsGene:GSBRNA2T00076234001 | Gene3D:3.30.40.10 | GO:A0A078HXH0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 |
| ProteinID:CDY43220 | ProteinID:CDY43220.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EDBFF3 |
| UniProt:A0A078HXH0 | MapMan:35.1 | : | : | : | : |
Description
BnaC08g04930DBnaC08g04930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXH0]
Coordinates
chrLK032549:-:93287..97369
Molecular Weight (calculated)
67194.6 Da
IEP (calculated)
7.848
GRAVY (calculated)
-0.743
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGERASIGS LSETMNFEHG STSSNPVAEQ QIRWDNDLQN YMSSAAAADT NTTMSNAVYH EPRDLHRFNL GEGSSSGTKN EAPSSHSEQW MQMGRFEERR
101: NDKLELNPLF MQQPSSGNRV VRDVNLNAEY IERAEDMNPV TGHPGLSQGS VAENNARAGC KRKAIDAGIG QSSSSIGAFH RGESSSSWVS GPSFYNHNDL
201: NISLNHAPRA LVPNLSPSPS PAISNRNFSF GANPTAQQPV FVRQPVPPSM SAPGHLQPVV DQQLMDMRYR HPFSNITPLN PNASAPSMPP RNMIPPFQWS
301: GNPVAAAGSS APVDRNSLRP GQSRLRSNML ANPLFVPAPP EPRNLAHGHV ASASVQPPAS SPTWAPYQNQ SPHNQRRLSE HRRRSLISSL LTNQRAAAAR
401: SMVPPPAPDQ HVVQPGGDDN FQTQNQAYSR AVPRQGQTAV GVPHSLRGLA STSRGRSRPS ASEIRNVLDH MRRTGNLRVE DFMILNQTMM LGVADVHDRY
501: RDMRLDVDDM TYEELLSLEE RIGDVCTGLN EETISNRLKQ RKYNSGTKST QEVEPCCVCQ EEYKEGEEMG VLECGHDFHS QCIKEWLKRK NLCPICKTTG
601: LNTVEKSSK
101: NDKLELNPLF MQQPSSGNRV VRDVNLNAEY IERAEDMNPV TGHPGLSQGS VAENNARAGC KRKAIDAGIG QSSSSIGAFH RGESSSSWVS GPSFYNHNDL
201: NISLNHAPRA LVPNLSPSPS PAISNRNFSF GANPTAQQPV FVRQPVPPSM SAPGHLQPVV DQQLMDMRYR HPFSNITPLN PNASAPSMPP RNMIPPFQWS
301: GNPVAAAGSS APVDRNSLRP GQSRLRSNML ANPLFVPAPP EPRNLAHGHV ASASVQPPAS SPTWAPYQNQ SPHNQRRLSE HRRRSLISSL LTNQRAAAAR
401: SMVPPPAPDQ HVVQPGGDDN FQTQNQAYSR AVPRQGQTAV GVPHSLRGLA STSRGRSRPS ASEIRNVLDH MRRTGNLRVE DFMILNQTMM LGVADVHDRY
501: RDMRLDVDDM TYEELLSLEE RIGDVCTGLN EETISNRLKQ RKYNSGTKST QEVEPCCVCQ EEYKEGEEMG VLECGHDFHS QCIKEWLKRK NLCPICKTTG
601: LNTVEKSSK
001: MQGERASLGS LSKALNFERG STSSNAVVDQ QIRWENLHNY GDNDLQDYMS SAADTNPTFA NSVYHEKRGL QRFNIGEASS SGTKNEGASL TEQWKGIGRF
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
101: EEQRNDKLEL SPLFVQPSNG SRVVRDVNLN AEYNEHLEDM NPVTVHPGHF EVNGLRSEFL LDNSVRAGSS VDGRRASCKR KALDASGGQS SSTGGFREFQ
201: RGVSSSWISG PTYYSPAMTA NDLNISLDHG RRGLVSSAVP NLSPPTITES SSRNYPVWVN PTYQQETVSN FAPSLNSPGL IPADHQQISM RYGHALGNFA
301: SQNPNAPATH MPPVSRNTFQ WNTSPVAAVI SSSSATPVDR NVIHRNATRQ RSNTLEIPLF VPAPELRNVA HGHISRNASG ARHVASSSSR TSVQPSPSSP
401: ALTPYQNNSL HNQRRLSENF RRSLLSSLVT QQRAARSLAH PASPNEHVLQ SGGDNTSQVH NRASSRAGPR QGQDATGISH SLRGLASTSR GRTRMGASEI
501: RNILEHMRRA GNLRLEDVML LNQSIMLGAA DIHDRYRDMR LDVDNMTYEE LLSLEERIGD VCTGLNEETI SNRLKQQKYK SSTRSSQEVE PCCVCQEEYK
601: EEEEIGRLEC GHDFHSQCIK EWLKQKNLCP ICKTTGLNTA NKPQR
Arabidopsis Description
F27F5.26 [Source:UniProtKB/TrEMBL;Acc:Q9MAJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.