Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400039670 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42940.1 | PGSC0003DMT400039670 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g078680.2.1 | Tomato | nucleus | 94.78 | 90.44 |
| PGSC0003DMT400079217 | Potato | cytosol | 8.27 | 57.58 |
| PGSC0003DMT400039849 | Potato | nucleus | 54.28 | 53.97 |
| KRH05664 | Soybean | nucleus | 9.14 | 52.07 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 51.52 | 48.37 |
| KRH52013 | Soybean | nucleus | 44.99 | 43.79 |
| KRH61306 | Soybean | nucleus | 40.93 | 43.12 |
| KRH61311 | Soybean | nucleus | 44.27 | 41.55 |
| Bra027467.1-P | Field mustard | nucleus | 22.79 | 38.29 |
| CDY32973 | Canola | nucleus | 22.35 | 37.56 |
| CDY43590 | Canola | nucleus | 22.5 | 36.82 |
| Bra014043.1-P | Field mustard | nucleus | 30.33 | 36.28 |
| CDY17061 | Canola | nucleus | 30.48 | 34.65 |
| CDY17114 | Canola | nucleus | 26.71 | 34.65 |
| CDY43220 | Canola | nucleus | 30.04 | 33.99 |
| CDX71531 | Canola | nucleus | 30.62 | 33.12 |
| AT1G45180.3 | Thale cress | nucleus | 30.77 | 32.87 |
| CDY22376 | Canola | nucleus | 29.32 | 32.85 |
| Bra033652.1-P | Field mustard | nucleus | 29.32 | 32.85 |
| AT5G42940.1 | Thale cress | nucleus | 32.22 | 32.13 |
| PGSC0003DMT400066252 | Potato | nucleus | 30.19 | 29.09 |
| PGSC0003DMT400020398 | Potato | nucleus | 6.24 | 24.29 |
| PGSC0003DMT400078539 | Potato | plastid | 7.84 | 21.69 |
| PGSC0003DMT400014732 | Potato | nucleus | 11.61 | 20.62 |
| PGSC0003DMT400004449 | Potato | nucleus | 14.95 | 19.0 |
| PGSC0003DMT400017553 | Potato | nucleus | 6.53 | 18.52 |
| PGSC0003DMT400039631 | Potato | nucleus | 14.37 | 18.47 |
| PGSC0003DMT400067670 | Potato | nucleus | 13.79 | 17.99 |
| PGSC0003DMT400075959 | Potato | nucleus | 14.22 | 17.98 |
| PGSC0003DMT400054921 | Potato | nucleus | 13.5 | 17.92 |
| PGSC0003DMT400037132 | Potato | nucleus | 6.1 | 17.57 |
| PGSC0003DMT400082375 | Potato | nucleus | 6.24 | 17.48 |
| PGSC0003DMT400095772 | Potato | cytosol | 4.64 | 17.2 |
| PGSC0003DMT400032385 | Potato | nucleus | 13.5 | 11.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020528 | EnsemblPlantsGene:PGSC0003DMG400007954 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 | PGSC:PGSC0003DMG400007954 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000294FA41 | UniProt:M1ADM8 | MapMan:35.1 |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007954]
Coordinates
chr4:+:67969570..67973327
Molecular Weight (calculated)
74483.3 Da
IEP (calculated)
7.112
GRAVY (calculated)
-0.703
Length
689 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGQRSAIGS LPETLGFTHG STSTDGGIDQ QICWNNLRNP AQSRLPDYMV PSNETTIQFL SHANQERQNV IGWNLGESSS SNTQNSVSRS ENTTMSACPG
101: TSHFSAEQHY GSSNILSLGD VEINLNNQLA DNTLFSQAST SSTVPNELNR SAGHEGHDGD EDDDDDCQVM ECTPTFKSNG PGKERMSTAS TSSDPLAGTS
201: ATNGFLRDES DGRPGCTLDG RRMACKRKAV EGHLGQSSGS GSPDYLLNSL WRSIPAPNNV TAGANSPAPT ESRRNISLPV PGNPRLGLAM GGTTMEGPVA
301: VPASRRAESY RRNFRLRING SHQQVPIPGN TFPTVGNDRN VTMSDWDALR LLPNESLDSR SVSAADNVNP RSQPVVGPVP SLRRSAQRWD SSSSRAGSSS
401: SYSVFGERNS AAYEQPSSRT VPRNISQHPM FIPASDLRNL NQNPVNWGLA GGNISIAGNV ASASRSGPNS VAPSSSPGWV EHRNPQQYPR RLSEYVRRSM
501: LSAAVSEPGS HNGNTPPHLS SAASQEMGLS GHPGHRPSSS RSALLLERQL DGAMGVPYSW RTLAAAGEGR GRLVSEQIRN VLDLMRRGES LRFEELLALE
601: ERIGNVCTGL TEETILNRLK QRKHVRIRTE ETKDAEPCCI CQEEYKDGED LGKLDCGHDF HANCVKQWLM QKNLCPICKT TGLNTSGKH
101: TSHFSAEQHY GSSNILSLGD VEINLNNQLA DNTLFSQAST SSTVPNELNR SAGHEGHDGD EDDDDDCQVM ECTPTFKSNG PGKERMSTAS TSSDPLAGTS
201: ATNGFLRDES DGRPGCTLDG RRMACKRKAV EGHLGQSSGS GSPDYLLNSL WRSIPAPNNV TAGANSPAPT ESRRNISLPV PGNPRLGLAM GGTTMEGPVA
301: VPASRRAESY RRNFRLRING SHQQVPIPGN TFPTVGNDRN VTMSDWDALR LLPNESLDSR SVSAADNVNP RSQPVVGPVP SLRRSAQRWD SSSSRAGSSS
401: SYSVFGERNS AAYEQPSSRT VPRNISQHPM FIPASDLRNL NQNPVNWGLA GGNISIAGNV ASASRSGPNS VAPSSSPGWV EHRNPQQYPR RLSEYVRRSM
501: LSAAVSEPGS HNGNTPPHLS SAASQEMGLS GHPGHRPSSS RSALLLERQL DGAMGVPYSW RTLAAAGEGR GRLVSEQIRN VLDLMRRGES LRFEELLALE
601: ERIGNVCTGL TEETILNRLK QRKHVRIRTE ETKDAEPCCI CQEEYKDGED LGKLDCGHDF HANCVKQWLM QKNLCPICKT TGLNTSGKH
001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
Arabidopsis Description
RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.