Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42940.1 | CDY26031 | AT1G52890.1 | 12646039 |
| AT5G42940.1 | CDY26032 | AT1G52890.1 | 12646039 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033652.1-P | Field mustard | nucleus | 99.67 | 99.67 |
| CDX71531 | Canola | nucleus | 88.13 | 85.09 |
| CDY43590 | Canola | nucleus | 52.03 | 76.01 |
| CDY32973 | Canola | nucleus | 50.41 | 75.61 |
| AT5G42940.1 | Thale cress | nucleus | 76.26 | 67.87 |
| KRH05664 | Soybean | nucleus | 12.85 | 65.29 |
| CDY17114 | Canola | nucleus | 45.04 | 52.17 |
| CDY43220 | Canola | nucleus | 49.92 | 50.41 |
| CDY17061 | Canola | nucleus | 49.43 | 50.16 |
| CDY47948 | Canola | nucleus | 34.8 | 42.54 |
| VIT_18s0001g10260.t01 | Wine grape | nucleus | 41.3 | 34.6 |
| KRH61306 | Soybean | nucleus | 35.28 | 33.18 |
| KRH52013 | Soybean | nucleus | 37.56 | 32.63 |
| Solyc04g078680.2.1 | Tomato | nucleus | 37.56 | 31.99 |
| Solyc12g088740.1.1 | Tomato | nucleus | 35.77 | 31.75 |
| KRH61311 | Soybean | nucleus | 37.4 | 31.34 |
| PGSC0003DMT400039849 | Potato | nucleus | 34.96 | 31.02 |
| PGSC0003DMT400020528 | Potato | nucleus | 32.85 | 29.32 |
| CDY62314 | Canola | nucleus | 27.97 | 29.05 |
| CDY37230 | Canola | nucleus | 27.8 | 29.03 |
| CDY13429 | Canola | cytosol | 11.54 | 27.52 |
| CDX77848 | Canola | nucleus | 8.46 | 24.53 |
| CDX97032 | Canola | plastid | 13.17 | 24.18 |
| CDY67192 | Canola | nucleus | 8.29 | 23.94 |
| CDY71882 | Canola | plastid | 13.5 | 23.71 |
| CDX93901 | Canola | nucleus | 8.62 | 22.08 |
| CDY53710 | Canola | nucleus | 8.62 | 21.9 |
| CDX68213 | Canola | nucleus, plastid | 12.36 | 21.78 |
| CDY11092 | Canola | cytosol, plastid | 11.87 | 20.98 |
| CDX85750 | Canola | nucleus | 13.01 | 20.73 |
| CDY69560 | Canola | nucleus | 16.91 | 20.43 |
| CDY26006 | Canola | nucleus | 15.12 | 20.13 |
| CDY25871 | Canola | nucleus | 15.61 | 20.08 |
| CDY46757 | Canola | nucleus | 17.4 | 20.07 |
| CDX79718 | Canola | nucleus | 17.24 | 19.96 |
| CDY40109 | Canola | nucleus | 6.02 | 19.89 |
| CDY60141 | Canola | plastid | 11.54 | 19.89 |
| CDY55839 | Canola | nucleus | 15.77 | 19.84 |
| CDY24110 | Canola | nucleus | 14.8 | 19.78 |
| CDX83878 | Canola | nucleus | 11.38 | 19.61 |
| CDX96741 | Canola | nucleus | 11.54 | 19.51 |
| CDX73013 | Canola | plastid | 11.22 | 19.44 |
| CDY68658 | Canola | nucleus | 14.63 | 19.19 |
| CDX88140 | Canola | nucleus | 14.96 | 19.09 |
| CDX75805 | Canola | cytosol | 13.66 | 18.96 |
| CDY63645 | Canola | nucleus | 14.15 | 18.83 |
| CDY27083 | Canola | nucleus | 6.67 | 18.72 |
| CDY13433 | Canola | nucleus | 14.15 | 18.67 |
| CDX82450 | Canola | nucleus | 13.5 | 18.53 |
| CDX95473 | Canola | nucleus | 13.82 | 18.32 |
| CDY68424 | Canola | nucleus | 15.94 | 18.25 |
| CDX91624 | Canola | nucleus | 6.5 | 18.18 |
| CDY55435 | Canola | nucleus | 15.61 | 18.18 |
| CDX97629 | Canola | nucleus | 13.01 | 18.14 |
| CDX78393 | Canola | nucleus | 14.47 | 18.02 |
| CDX97044 | Canola | nucleus | 14.8 | 17.84 |
| CDY68521 | Canola | nucleus | 12.68 | 17.69 |
| CDX70363 | Canola | nucleus | 13.5 | 17.08 |
| CDX91625 | Canola | cytosol | 6.34 | 17.03 |
| CDY33429 | Canola | nucleus | 9.11 | 16.97 |
| CDY31919 | Canola | nucleus | 7.48 | 16.85 |
| CDY24595 | Canola | nucleus | 8.62 | 16.83 |
| CDY36635 | Canola | nucleus | 16.26 | 16.78 |
| CDX69813 | Canola | mitochondrion | 14.47 | 16.7 |
| CDY25357 | Canola | nucleus | 8.62 | 16.56 |
| CDY00512 | Canola | nucleus | 7.32 | 16.48 |
| CDY42218 | Canola | nucleus | 8.94 | 16.47 |
| CDY27082 | Canola | cytosol | 6.02 | 15.55 |
Protein Annotations
| EnsemblPlants:CDY22376 | EnsemblPlantsGene:GSBRNA2T00018860001 | Gene3D:3.30.40.10 | GO:A0A078GAG1 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 |
| PFscan:PS50089 | ProteinID:CDY22376 | ProteinID:CDY22376.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEB24F | UniProt:A0A078GAG1 | MapMan:35.1 | : | : | : |
Description
BnaA06g36980DBnaA06g36980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAG1]
Coordinates
chrLK032130:+:378284..381700
Molecular Weight (calculated)
66788.0 Da
IEP (calculated)
5.790
GRAVY (calculated)
-0.697
Length
615 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGERASLGY LSEGLNFEHG STSSNGLMDH WDGLGDNDLQ DYMIANSESL AHSVYPEQHR FSLGEEASSS GTKNEASGHN EQLRNEIIDL DSDSEQPSGD
101: NQNVNLNAEY IELDEDIDVV EANGSGNRAS QPGRPFQETS VRTGSSVDAS CKRKAIEGSS SGQSSLGGYH HGESSSSWTP VSTEYRSVNG LNISGSRGEV
201: SATASNFLVS SSRNTCVRSN PSETVSPAAF SAGTVVRRPV PPPHSNLSRL VPSDHHGQSL GNIFSRNPNP PAPVSRNMLP PFQWTESSLA GESFNSTVPT
301: ERNNLHLEDT RSRSITAASV LENPLFNPAP DLSRNANLSI ASSSSVSRTG SSTGVQAPSS NLAWTPHRNL PPHQRRRSEL AHRSLISSLS ADARSGDHHP
401: PLRSLAPPAP QDGLVLQPGG GDSSRAYSRA GLWLDRQVDS LVGAPQSLRA LAAASRGRNR LMVSQMQNIL EVMRRDPNHN LRLEDVMLLN QSGIFDGAAG
501: MHDRYRDMRL DVDNMSYEEL LALEERIGDV CTGVNEETIS NRLKQSKYKS STKSPEDAEP CCICQEEYTE GDDMGTLECG HEFHSQCIKE WLKQKNLCPI
601: CKTTGLNTAK KRKIG
101: NQNVNLNAEY IELDEDIDVV EANGSGNRAS QPGRPFQETS VRTGSSVDAS CKRKAIEGSS SGQSSLGGYH HGESSSSWTP VSTEYRSVNG LNISGSRGEV
201: SATASNFLVS SSRNTCVRSN PSETVSPAAF SAGTVVRRPV PPPHSNLSRL VPSDHHGQSL GNIFSRNPNP PAPVSRNMLP PFQWTESSLA GESFNSTVPT
301: ERNNLHLEDT RSRSITAASV LENPLFNPAP DLSRNANLSI ASSSSVSRTG SSTGVQAPSS NLAWTPHRNL PPHQRRRSEL AHRSLISSLS ADARSGDHHP
401: PLRSLAPPAP QDGLVLQPGG GDSSRAYSRA GLWLDRQVDS LVGAPQSLRA LAAASRGRNR LMVSQMQNIL EVMRRDPNHN LRLEDVMLLN QSGIFDGAAG
501: MHDRYRDMRL DVDNMSYEEL LALEERIGDV CTGVNEETIS NRLKQSKYKS STKSPEDAEP CCICQEEYTE GDDMGTLECG HEFHSQCIKE WLKQKNLCPI
601: CKTTGLNTAK KRKIG
001: MQGERASLGY LSEALNFEHG SSSSNGVIDH WENIHSLGDN DLQDYMIANS ESNTSLANSV YHEQQGLRRF SLGEASSSGT KDEASSHNEQ RMETRCFDGR
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
101: GNEIIDLDPV FAQPSGTNQP VQNVNLNAEY IEIHEDINPY RGRSGFIEAN GPGTRVSQPG RSFEENGVGT GSSVEGRRAS CKRKALEGSI SQSSSGGYHD
201: FQRGESSSWT PGSTVFRPGN GLNISGSLDN GPRGMVSGTV PNFPVSAPNF PVSAIAESSS RNICVRSNPS DHQETVNPST FAAGTVVRRP VPPSQLNLSR
301: HLPADQHSLD LRPGQSFVVS RNPNSTPVSI PPGSRTMLPP FRWTGSSLVG GTSNSTAPVE RNLHLDETRS RSIPGNTLEI PMFAAPEVGN FARSQSSRNV
401: TNGNLNSASS VSRTGSTTSV PPPPPPSSNL AWTSYQNSPH YQRRRTERSE LARRSLLSSL AADATNQRSG DHPTLRSLAP PASSDGLVLQ PGGDNSQMHN
501: RAYSRAGPLF DRQGDSVVGI PHPLRALAAA SRGRSRLMVS QMQNVLDVMR RDANNNNLRL EDVMLLNHSV LFDGATGHDR YRDMRLDVDN MSYEELLALE
601: ERIGDVCTGV NEETISNRLK QRKYKSNTKS PQDAEPCCVC QEEYTEGEDM GTLECGHEFH SQCIKEWLKQ KNLCPICKTT GLNTAKKRRI A
Arabidopsis Description
RHG1AProbable E3 ubiquitin-protein ligase RHG1A [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.