Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26031 | Canola | cytosol | 93.17 | 99.34 |
| CDX82432 | Canola | nucleus | 83.23 | 54.25 |
| CDX82430 | Canola | nucleus | 60.25 | 48.74 |
| CDY22671 | Canola | nucleus | 59.63 | 48.24 |
| AT1G52890.1 | Thale cress | nucleus | 93.17 | 47.32 |
| CDX75833 | Canola | nucleus | 83.85 | 45.45 |
| CDY21844 | Canola | nucleus | 86.96 | 44.16 |
| CDY20109 | Canola | nucleus | 86.96 | 44.16 |
| CDX98560 | Canola | nucleus | 86.96 | 43.75 |
| CDY29303 | Canola | nucleus | 81.37 | 43.67 |
| CDX97674 | Canola | nucleus | 86.96 | 43.61 |
| CDY29836 | Canola | nucleus | 80.75 | 43.33 |
| CDX92828 | Canola | nucleus | 80.75 | 43.33 |
| CDX89253 | Canola | nucleus | 80.75 | 43.33 |
| Bra018998.1-P | Field mustard | nucleus | 96.89 | 40.73 |
| VIT_19s0014g03290.t01 | Wine grape | nucleus | 81.37 | 39.34 |
| CDY41537 | Canola | nucleus | 59.63 | 38.4 |
| CDX84443 | Canola | nucleus | 59.01 | 37.7 |
| KRH27201 | Soybean | nucleus | 80.12 | 37.39 |
| KRH22137 | Soybean | nucleus | 79.5 | 37.32 |
| CDY40732 | Canola | cytosol, nucleus, plastid | 59.63 | 37.21 |
| CDY44788 | Canola | cytosol, nucleus, plastid | 59.63 | 36.64 |
| PGSC0003DMT400039670 | Potato | nucleus | 79.5 | 36.47 |
| Solyc12g013620.1.1 | Tomato | nucleus | 78.88 | 36.39 |
| CDY40894 | Canola | nucleus | 58.39 | 36.15 |
| CDX78352 | Canola | cytosol, nucleus, plastid | 58.39 | 35.88 |
| CDY31350 | Canola | nucleus | 58.39 | 35.47 |
| CDY38346 | Canola | cytosol, nucleus, plastid | 57.14 | 35.38 |
| CDX90054 | Canola | nucleus | 62.11 | 35.09 |
| CDY42902 | Canola | nucleus | 60.87 | 35.0 |
| CDY15158 | Canola | nucleus | 61.49 | 34.62 |
| CDX81120 | Canola | nucleus | 51.55 | 34.44 |
| CDX69919 | Canola | nucleus | 59.01 | 34.17 |
| CDY21567 | Canola | nucleus | 59.01 | 34.17 |
| CDY40930 | Canola | cytosol | 56.52 | 33.7 |
| CDX95931 | Canola | cytosol | 56.52 | 33.7 |
| CDY07348 | Canola | nucleus | 55.28 | 32.84 |
| CDY51500 | Canola | nucleus | 55.28 | 32.72 |
| CDY39846 | Canola | mitochondrion | 58.39 | 31.97 |
| CDY12886 | Canola | nucleus | 63.35 | 31.78 |
| CDY40970 | Canola | nucleus | 63.35 | 31.68 |
| CDY69545 | Canola | nucleus | 59.63 | 30.77 |
| CDY53806 | Canola | nucleus | 60.25 | 30.5 |
| CDY50880 | Canola | nucleus | 61.49 | 30.46 |
| CDY56427 | Canola | nucleus | 60.87 | 29.97 |
| CDX97675 | Canola | nucleus | 62.11 | 29.15 |
| CDY29983 | Canola | nucleus | 62.11 | 28.17 |
| CDY20131 | Canola | nucleus | 60.87 | 28.0 |
| CDY14865 | Canola | nucleus | 47.83 | 27.8 |
| CDY30373 | Canola | nucleus | 47.83 | 27.8 |
| CDY55499 | Canola | nucleus | 47.2 | 27.24 |
| CDY53654 | Canola | nucleus | 47.2 | 27.24 |
| CDX98562 | Canola | nucleus | 60.25 | 27.02 |
| CDX84050 | Canola | nucleus | 31.68 | 26.42 |
| CDY64562 | Canola | nucleus | 44.1 | 24.15 |
| CDY43391 | Canola | nucleus | 44.1 | 24.07 |
| CDY11662 | Canola | nucleus | 49.69 | 23.88 |
| CDX67438 | Canola | nucleus | 49.69 | 23.88 |
| CDY26794 | Canola | nucleus | 40.99 | 23.66 |
| CDY47486 | Canola | nucleus | 40.99 | 23.66 |
| CDY47485 | Canola | nucleus | 40.99 | 23.66 |
| CDX82569 | Canola | nucleus | 44.1 | 23.51 |
| CDY24238 | Canola | nucleus | 44.72 | 23.45 |
| CDY02222 | Canola | nucleus | 40.37 | 23.13 |
| CDY39487 | Canola | nucleus | 40.37 | 23.13 |
| CDY60122 | Canola | nucleus | 45.96 | 22.63 |
| CDX71329 | Canola | endoplasmic reticulum, extracellular | 40.99 | 21.5 |
| CDY65270 | Canola | nucleus | 52.17 | 21.27 |
| CDY31385 | Canola | cytosol | 40.99 | 20.69 |
| CDY17437 | Canola | nucleus | 50.93 | 20.2 |
| CDY46433 | Canola | nucleus | 51.55 | 20.15 |
| CDY09368 | Canola | nucleus | 50.31 | 19.95 |
| CDY15835 | Canola | nucleus | 50.31 | 19.9 |
| CDY04129 | Canola | nucleus | 50.31 | 19.85 |
| CDY03050 | Canola | nucleus | 50.93 | 19.81 |
| CDY17595 | Canola | nucleus | 50.93 | 19.66 |
| CDY01755 | Canola | nucleus | 48.45 | 19.65 |
| CDY23551 | Canola | nucleus | 45.34 | 19.47 |
| CDX95910 | Canola | nucleus | 48.45 | 19.07 |
| CDY42810 | Canola | nucleus | 47.2 | 14.9 |
| CDX83510 | Canola | nucleus | 46.58 | 14.71 |
| CDY54324 | Canola | extracellular | 1.86 | 1.08 |
| CDY16201 | Canola | plastid | 0.62 | 0.38 |
| CDX82429 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078GLM6 | UniProt:A0A078GLM6 | EnsemblPlants:CDY26032 | ProteinID:CDY26032 |
| ProteinID:CDY26032.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00033573001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR44908 |
| SUPFAM:SSF101941 | UniParc:UPI0004EF1E0F | : | : | : | : |
Description
BnaC06g05920DBnaC06g05920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLM6]
Coordinates
chrLK032184:-:369811..370381
Molecular Weight (calculated)
18461.2 Da
IEP (calculated)
9.955
GRAVY (calculated)
-0.536
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIQETDPLA QLSLPPGFRF YPTDEELMVQ YLCRKAAGYD FSLQLIAEID LYKFDPWVLP NKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIISTEGKR VGIKKALVFY IGKAPKGTKT NWIMHEYRLL EPSRANGSSK VTIQHANYLK N
101: DKIISTEGKR VGIKKALVFY IGKAPKGTKT NWIMHEYRLL EPSRANGSSK VTIQHANYLK N
001: MSELLQLPPG FRFHPTDEEL VMHYLCRKCA SQSIAVPIIA EIDLYKYDPW ELPGLALYGE KEWYFFSPRD RKYPNGSRPN RSAGSGYWKA TGADKPIGLP
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
101: KPVGIKKALV FYAGKAPKGE KTNWIMHEYR LADVDRSVRK KKNSLRLDDW VLCRIYNKKG ATERRGPPPP VVYGDEIMEE KPKVTEMVMP PPPQQTSEFA
201: YFDTSDSVPK LHTTDSSCSE QVVSPEFTSE VQSEPKWKDW SAVSNDNNNT LDFGFNYIDA TVDNAFGGGG SSNQMFPLQD MFMYMQKPY
Arabidopsis Description
NAC002ATAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8W1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.