Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020905.1-P | Field mustard | cytosol | 98.11 | 98.11 |
| CDY31421 | Canola | cytosol | 94.33 | 95.35 |
| Zm00001d029743_P001 | Maize | cytosol | 10.04 | 73.91 |
| CDX94046 | Canola | nucleus | 80.28 | 71.5 |
| CDX98696 | Canola | nucleus | 74.38 | 67.6 |
| GSMUA_Achr11P... | Banana | cytosol | 3.07 | 66.67 |
| AT4G21670.1 | Thale cress | nucleus | 74.73 | 65.46 |
| CDX79083 | Canola | nucleus | 64.58 | 63.68 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 49.23 | 52.92 |
| KRH50009 | Soybean | nucleus | 58.32 | 51.67 |
| KRH20483 | Soybean | nucleus | 58.21 | 51.35 |
| PGSC0003DMT400057635 | Potato | nucleus | 53.13 | 51.08 |
| KRH10835 | Soybean | nucleus | 57.02 | 50.42 |
| KRH21480 | Soybean | nucleus | 56.2 | 49.58 |
| Solyc02g078550.2.1 | Tomato | nucleus | 55.37 | 49.16 |
| GSMUA_Achr11P... | Banana | extracellular | 10.51 | 48.63 |
| EES05486 | Sorghum | cytosol | 51.0 | 46.25 |
| Os02t0639000-01 | Rice | cytosol | 51.12 | 46.06 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 51.0 | 45.57 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 50.06 | 45.49 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 50.3 | 45.22 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 50.53 | 45.1 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 50.06 | 45.06 |
| GSMUA_Achr11P... | Banana | nucleus | 49.23 | 44.98 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 49.94 | 44.9 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 47.23 | 44.89 |
| Os04t0529500-02 | Rice | extracellular | 49.23 | 44.69 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 49.94 | 44.62 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 49.82 | 44.47 |
| Zm00001d017373_P001 | Maize | nucleus | 50.3 | 44.28 |
| KXG26770 | Sorghum | nucleus | 48.17 | 43.31 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 47.46 | 42.9 |
| CDY11208 | Canola | nucleus | 37.78 | 40.51 |
| CDX80779 | Canola | nucleus | 37.78 | 40.51 |
| CDX81142 | Canola | cytosol | 9.33 | 38.73 |
| CDX81143 | Canola | extracellular, plasma membrane, plastid | 6.26 | 29.94 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | EnsemblPlants:CDX76438 | ProteinID:CDX76438 | ProteinID:CDX76438.1 |
| InterPro:FCP1_dom | EnsemblPlantsGene:GSBRNA2T00126844001 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
| SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI0004EE4895 | InterPro:dsRBD_dom | SEG:seg |
Description
BnaA08g09620D
Coordinates
chrLK031807:+:1178782..1183367
Molecular Weight (calculated)
94706.2 Da
IEP (calculated)
6.237
GRAVY (calculated)
-0.443
Length
847 amino acids
Sequence
(BLAST)
(BLAST)
001: MYNNSNRVQV YLEDGRVGEM EICPPRESHQ EDHVMKQRRV MEKVKMGMGI RISRFSQPSE RCPPLAVLAT VSSCGLCFKL EASPSPAQEQ LSLLYSSCLR
101: GNKTAVMSLG EEELHLVAMY AENINNDRPC FWAFTVAPGI YDSCLVMLNL RCLGIVFDLD ETLVVANTTR TFEDKIEGLQ RRINNEGDPQ RIAAMVAEMK
201: RYQDDRNLLK QYIESDQVID NGEVVKVQSE LVPALSENHQ PLVRPLIRLP EKNIILTRIN PMIRDTSVLV RMRPSWEELR SYLTAKGRKR FEVYVCTMAE
301: RDYALEMWRL LDPEGNLINA SDLLARIVCV KSGFKKSLVN VFPDATCHPK MAMVIDDRLK VWEEKDQPRV YVVPAFVPYY SPQAEAAATP VLCVTRNVAC
401: RVRGGFFRDF DDSLLQRIAE ISYENDVEDI PSPPDVSHYL VPEDETSGLN ENKDPLSLDG MAEVERRLKE AISVVLPAAN IDPRIAAPVQ YPMASVSVSA
501: PVPVAVPVVQ QAPQPSAMAF PSIQFQQPIS IAKLLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDSRDAAP SEPPFPQRPP VQAPPPQAQP
601: RNGWFPVEDM DPATLRRTVS KEYPVDSERP RHQSDRMPHE NRRLPKELRP NNNLPGSHPF YGEEASWNQS SSRISDIGRS VSATENPAEA LHEIAIKCGT
701: KVDYRPGLVA STDLRFSVEA WFSGKKVGEG IGKSRREALQ KAAELSLQNL ADIYLSVANG DAGPSHRDAI ASPLANGNMI MGGNANTFDN LPFARDETAM
801: AVPSRSMLPL HKRQGSPRSF GGMSNKRLKP DFQRSSMQRM PSSGRYS
101: GNKTAVMSLG EEELHLVAMY AENINNDRPC FWAFTVAPGI YDSCLVMLNL RCLGIVFDLD ETLVVANTTR TFEDKIEGLQ RRINNEGDPQ RIAAMVAEMK
201: RYQDDRNLLK QYIESDQVID NGEVVKVQSE LVPALSENHQ PLVRPLIRLP EKNIILTRIN PMIRDTSVLV RMRPSWEELR SYLTAKGRKR FEVYVCTMAE
301: RDYALEMWRL LDPEGNLINA SDLLARIVCV KSGFKKSLVN VFPDATCHPK MAMVIDDRLK VWEEKDQPRV YVVPAFVPYY SPQAEAAATP VLCVTRNVAC
401: RVRGGFFRDF DDSLLQRIAE ISYENDVEDI PSPPDVSHYL VPEDETSGLN ENKDPLSLDG MAEVERRLKE AISVVLPAAN IDPRIAAPVQ YPMASVSVSA
501: PVPVAVPVVQ QAPQPSAMAF PSIQFQQPIS IAKLLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDSRDAAP SEPPFPQRPP VQAPPPQAQP
601: RNGWFPVEDM DPATLRRTVS KEYPVDSERP RHQSDRMPHE NRRLPKELRP NNNLPGSHPF YGEEASWNQS SSRISDIGRS VSATENPAEA LHEIAIKCGT
701: KVDYRPGLVA STDLRFSVEA WFSGKKVGEG IGKSRREALQ KAAELSLQNL ADIYLSVANG DAGPSHRDAI ASPLANGNMI MGGNANTFDN LPFARDETAM
801: AVPSRSMLPL HKRQGSPRSF GGMSNKRLKP DFQRSSMQRM PSSGRYS
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.