CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11208	Canola	nucleus	92.41	92.41
AT5G01270.2	Thale cress	nucleus	79.62	81.27
CDX81142	Canola	cytosol	14.3	55.39
CDX81143	Canola	extracellular, plasma membrane, plastid	12.41	55.37
VIT_08s0007g02130.t01	Wine grape	nucleus	58.86	54.51
GSMUA_Achr10P...	Banana	cytosol	39.75	52.16
KRH49327	Soybean	nucleus	53.54	50.42
KRH00194	Soybean	nucleus	53.8	50.42
Solyc09g014440.2.1	Tomato	cytosol	50.25	49.13
TraesCS3D01G362900.4	Wheat	cytosol, nucleus	43.29	48.58
TraesCS3A01G370000.2	Wheat	mitochondrion	43.16	46.14
TraesCS3B01G401900.2	Wheat	mitochondrion	43.16	45.35
KXG33725	Sorghum	cytosol, nucleus, plastid	42.41	44.79
Os01t0857000-01	Rice	cytosol, nucleus, plastid	42.78	44.71
Zm00001d042804_P001	Maize	plastid	41.14	41.67
CDY31421	Canola	cytosol	40.63	38.31
CDX76438	Canola	cytosol	40.51	37.78
CDX98696	Canola	nucleus	40.38	34.23
CDX94046	Canola	nucleus	40.38	33.54
CDX79083	Canola	nucleus	35.95	33.06

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	EnsemblPlants:CDX80779	ProteinID:CDX80779	ProteinID:CDX80779.1
InterPro:FCP1_dom	EnsemblPlantsGene:GSBRNA2T00134152001	InterPro:HAD-like_sf	InterPro:IPR004274	InterPro:IPR014720	PFAM:PF00035
PFAM:PF03031	PFscan:PS50137	PFscan:PS50969	PANTHER:PTHR23081	PANTHER:PTHR23081:SF10	SMART:SM00358
SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784	UniParc:UPI0004EEE6B0	InterPro:dsRBD_dom	SEG:seg

Description

BnaC03g00330D

Coordinates

chrLK031823:+:168994..173341

Molecular Weight (calculated)

88128.4 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.353

Length

790 amino acids

Sequence
(BLAST)

001: MNRLGQKSMV YHGELRLGEL DVKQVSSSPG NEFRFPNDEI RIHHVSPAGE RCPPLAILQT IASFSVRCKL ESSAPVKPPE LMRLHAVCFH ELKTAVVLLG
101: ETEIHLVAMP SKEKKFPCFW CFSLPLGLYD SCLRMLNTRC LSIVFDLDET LIVAHTMKSF EDRIEALKVW ISRESDPVRI HGMSAELKRF MDDRMLLKQY
201: IDNDYAFDNG VLLKAQREEV RPTSDGLEKV YRPVIRLPEK NTVLTRINPE IRDTSVLVKL RPAWEELRSY LTANTRKRFE VYVCTMAERD YALEMWRLLD
301: PEAHLIGLKE LRDRIVCVKP GQNSSLASFI RPFLILYISF ITVFVLNSDA KKSLLNVFKG GICHPKMAMV IDDRVKVWED KDQPRVHVVP AYLPYYAPQA
401: EASLPVPILC VARNVACNVR GYFFKEFDES LMSSISLVYH EDDVENLPPS PDVSNYVIIE DPVFASNGNI NAPPVIEGMC GGEVERRLNQ ASAADSSTPA
501: TSNAEQKSET PKPQIAVIPN NASTTTAAAL LPSHKPSLLG APRRDGFTFS DGGRPLMMRP GVDIRNQNFN QPPLLSRIPM QPPSSSMHPQ GGWLVDDENR
601: TPFPGRPAGG YSNQFPHGIQ GSAPVTNPSH LRSEELCVDD DLKRQNASRQ PTEGGIPQSQ LVSNGGENHA DSGKSNGGQS HLFVSALQEI GRRCGSKVEF
701: RTVMSTNREL QFSVEVLFTG EKIGIGMAKT KKDAHQQAAE NALRSLAEKY VAYVSPIAGE TERGSKNENG FLWENNEAVG NEGLEEEEAT

Best Arabidopsis Sequence Match ( AT5G01270.2 )
(BLAST)

001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL VLRK

Arabidopsis Description

CPL2Carboxyl-terminal domain (Ctd) phosphatase-like 2 [Source:UniProtKB/TrEMBL;Acc:F4K802]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.