Factsheet for VIT_08s0007g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00194	Soybean	nucleus	62.37	63.11
KRH49327	Soybean	nucleus	60.96	61.98
AT5G01270.2	Thale cress	nucleus	55.1	60.72
Solyc09g014440.2.1	Tomato	cytosol	56.62	59.78
CDX80779	Canola	nucleus	54.51	58.86
Bra005692.1-P	Field mustard	nucleus	54.16	58.41
GSMUA_Achr10P...	Banana	cytosol	41.03	58.14
CDY11208	Canola	nucleus	53.69	57.97
TraesCS3D01G362900.4	Wheat	cytosol, nucleus	43.73	52.98
TraesCS3A01G370000.2	Wheat	mitochondrion	43.96	50.74
TraesCS3B01G401900.2	Wheat	mitochondrion	43.61	49.47
Os01t0857000-01	Rice	cytosol, nucleus, plastid	43.26	48.81
KXG33725	Sorghum	cytosol, nucleus, plastid	42.67	48.66
Zm00001d042804_P001	Maize	plastid	41.03	44.87
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	39.74	43.02
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	1.76	9.38

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	ProteinID:CBI30403	ProteinID:CBI30403.3	UniProt:D7TH87
InterPro:FCP1_dom	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058
GO:GO:0009987	GO:GO:0016591	GO:GO:0016787	GO:GO:0019538	GO:GO:0070940	InterPro:HAD-like_sf
InterPro:IPR004274	InterPro:IPR014720	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF10	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784
UniParc:UPI0001BE34DA	ArrayExpress:VIT_08s0007g02130	EnsemblPlantsGene:VIT_08s0007g02130	EnsemblPlants:VIT_08s0007g02130.t01	unigene:Vvi.13626	InterPro:dsRBD_dom

Description

No Description!

Coordinates

chr8:-:16163612..16181914

Molecular Weight (calculated)

95163.5 Da

IEP (calculated)

7.039

GRAVY (calculated)

-0.392

Length

853 amino acids

Sequence
(BLAST)

001: MSRLGFKSLV YHGDLFLGEL DAIPVKDQSF QFPNNEIRVH HISPISERCP PLSILHTISS FSVRCKLESS SPIQQPNLIN LHASCFHELK TAVVLIGDEE
101: LHLVAMPSKQ KKFPCFWCYS VPCGLYSSSL WMLNLRCLAI VFDLDETLIV ANTMKSFEDR IDALRGWIAR ESDQVRISGM SAELKRYIDD RALLKQYTEN
201: DLVMDNGKIL KVQSEEVAPL SDSHERVVRP VIRFPERNIV LTRINPEIRD TSVLVRLRPA WEDLRSYLIA KGRKRFEVYV CTMAERDYAL EMWRLLDPEA
301: HLIGSKQLLD RVVCVKSGSR KSLLNVFQNG SCHPKMAMVI DDRLKVWEDK DQPRVHVVPP FTPYYAPQAE TTNPVPILCV ARNVACNVRA GFFKEFDENI
401: LRQISELFYE DEVVNLPSAP DVSNYLMSED AGFVPNGNAN VPIAEGMHGA EVERRLNQPH IVDSAASPIA NSYEFRSETL QPPALTVQNV VGPTSSRLLM
501: PSQKPSLLGA PIKRDFSSFE SDADMKRRLL IMKHGQDVRN QSLGDPPILS RLPQISTSSL HPQGVWLVED DSNRGHLNNR ASGLVQEADV LKPDKQRGHQ
601: IPFGHNTPGS TPVSLLPHLP QLKNDEVSAA NERQKKNLPP ASQPSEVGVS QNQASTTGRE QTEAGKVNMM PPHLSIGVLQ EIGRRCSSKV EFRSVVSTSK
701: DLQFSVEVLF TGEKIGVGMG KTRKDAQQQA AENALHSLAD KYVAYTTPHS GAVDKDFDKL SLSNENGFLW DTTSAGSSEL LMEDGFPKES ISEAGEMAHG
801: TTSSSVVNQQ VQKRANSPRL PQSIPSKRSK EELMRGSQSL SSSWPQKNGH TIS

Best Arabidopsis Sequence Match ( AT5G01270.1 )
(BLAST)

001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL

Arabidopsis Description

CPL2Carboxyl-terminal domain (Ctd) phosphatase-like 2 [Source:UniProtKB/TrEMBL;Acc:F4K802]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.