Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G362900.4 | Wheat | cytosol, nucleus | 93.64 | 98.3 |
| TraesCS3B01G401900.2 | Wheat | mitochondrion | 97.43 | 95.74 |
| Os01t0857000-01 | Rice | cytosol, nucleus, plastid | 81.06 | 79.23 |
| KXG33725 | Sorghum | cytosol, nucleus, plastid | 75.51 | 74.6 |
| Zm00001d042804_P001 | Maize | plastid | 73.88 | 70.0 |
| GSMUA_Achr10P... | Banana | cytosol | 49.12 | 60.3 |
| AT5G01270.2 | Thale cress | nucleus | 47.9 | 45.74 |
| VIT_08s0007g02130.t01 | Wine grape | nucleus | 50.74 | 43.96 |
| Solyc09g014440.2.1 | Tomato | cytosol | 47.77 | 43.69 |
| CDY11208 | Canola | nucleus | 46.55 | 43.54 |
| Bra005692.1-P | Field mustard | nucleus | 46.41 | 43.36 |
| CDX80779 | Canola | nucleus | 46.14 | 43.16 |
| KRH49327 | Soybean | nucleus | 48.31 | 42.55 |
| KRH00194 | Soybean | nucleus | 48.04 | 42.11 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 44.25 | 34.75 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 43.17 | 33.65 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | ncoils:Coil | InterPro:FCP1_dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016791 | GO:GO:0040007 |
| GO:GO:0048589 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | PFAM:PF00035 | PFAM:PF03031 |
| PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF10 | SMART:SM00358 | SMART:SM00577 |
| SUPFAM:SSF54768 | SUPFAM:SSF56784 | EnsemblPlantsGene:TraesCS3A01G370000 | EnsemblPlants:TraesCS3A01G370000.2 | TIGR:cd00048 | InterPro:dsRBD_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:620762353..620771825
Molecular Weight (calculated)
82107.4 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.287
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRPSPLLPV PGASASATAA PPGRAASMRM FHGDVFLGEA DVFPIKPGPE GALPFPSNEI RISHLSPASE RCPPLAILQT IAPFSVRCKL QARPLPPHSS
101: LHRLYLTCFN EYKSAVVVVG DEELHLVAMP SKVEKVPCFW CCSVRAGLYA ASVGMLNLRC LAIVFDLDET LIVANTMRSF ESRIEMLSRR MDIEDDPVRV
201: AGMSAEIKRY IEDRELLKEF IDTDTVTDNG RIVGTQKEEV QPMPGVQERL VRPVIRLPER NAILTRINPE IRDTSVFVKL RPAWEDLRSY LTAKGRKRFE
301: VYVCTMAERD YALEIWRLLD PEANLISLNN LSDRVVCVKA GSKKSLQHVF REGGCHPKMA MVIDDRLQVW DEKDQHRVHV VPAYAPYYAP QAEMANAVPV
401: LCVARNVACN VRGGFFREFD ENLLKKVFEL LYENELLDLP YAPDVGDYLV SEDPNFPPSN KDPAPIPEGM SGTEVEKRLN GRAYQGDQKQ ISSSIRPSDD
501: ARVAIRGTLG SSNVQPNGGS MAIVPSLFVT VLQEIGRLCN SKVEFRSTVS TSKITQFSVE VLFSNEKIGN GIGKTRDEAQ VQAAEKALQN LQSNYLSYVA
601: PIAGVLNKDT SKSSRNGNGF LEDDLDSDGD TAMQEPSGSK SEQKDHSNVD RLPSVLSLIR ELCLEDQHVV FRDQVRNPGS ATNEEYHFQV ELAGQILGNG
701: IGVNKDFAKL QAAEEALRFL KTTTDPQIKK HLRPIRCSS
101: LHRLYLTCFN EYKSAVVVVG DEELHLVAMP SKVEKVPCFW CCSVRAGLYA ASVGMLNLRC LAIVFDLDET LIVANTMRSF ESRIEMLSRR MDIEDDPVRV
201: AGMSAEIKRY IEDRELLKEF IDTDTVTDNG RIVGTQKEEV QPMPGVQERL VRPVIRLPER NAILTRINPE IRDTSVFVKL RPAWEDLRSY LTAKGRKRFE
301: VYVCTMAERD YALEIWRLLD PEANLISLNN LSDRVVCVKA GSKKSLQHVF REGGCHPKMA MVIDDRLQVW DEKDQHRVHV VPAYAPYYAP QAEMANAVPV
401: LCVARNVACN VRGGFFREFD ENLLKKVFEL LYENELLDLP YAPDVGDYLV SEDPNFPPSN KDPAPIPEGM SGTEVEKRLN GRAYQGDQKQ ISSSIRPSDD
501: ARVAIRGTLG SSNVQPNGGS MAIVPSLFVT VLQEIGRLCN SKVEFRSTVS TSKITQFSVE VLFSNEKIGN GIGKTRDEAQ VQAAEKALQN LQSNYLSYVA
601: PIAGVLNKDT SKSSRNGNGF LEDDLDSDGD TAMQEPSGSK SEQKDHSNVD RLPSVLSLIR ELCLEDQHVV FRDQVRNPGS ATNEEYHFQV ELAGQILGNG
701: IGVNKDFAKL QAAEEALRFL KTTTDPQIKK HLRPIRCSS
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.