Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33725 | Sorghum | cytosol, nucleus, plastid | 86.67 | 90.37 |
| TraesCS3D01G362900.4 | Wheat | cytosol, nucleus | 68.97 | 76.42 |
| TraesCS3A01G370000.2 | Wheat | mitochondrion | 70.0 | 73.88 |
| Os01t0857000-01 | Rice | cytosol, nucleus, plastid | 71.41 | 73.68 |
| TraesCS3B01G401900.2 | Wheat | mitochondrion | 69.49 | 72.07 |
| Zm00001d029743_P001 | Maize | cytosol | 10.26 | 69.57 |
| GSMUA_Achr10P... | Banana | cytosol | 44.36 | 57.48 |
| Zm00001d031322_P001 | Maize | cytosol | 3.46 | 43.55 |
| AT5G01270.2 | Thale cress | nucleus | 42.82 | 43.15 |
| Bra005692.1-P | Field mustard | nucleus | 42.05 | 41.47 |
| CDY11208 | Canola | nucleus | 41.92 | 41.39 |
| CDX80779 | Canola | nucleus | 41.67 | 41.14 |
| VIT_08s0007g02130.t01 | Wine grape | nucleus | 44.87 | 41.03 |
| Solyc09g014440.2.1 | Tomato | cytosol | 42.44 | 40.97 |
| KRH49327 | Soybean | nucleus | 42.05 | 39.09 |
| KRH00194 | Soybean | nucleus | 42.05 | 38.91 |
| Zm00001d017373_P001 | Maize | nucleus | 39.23 | 31.81 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 38.21 | 31.8 |
Protein Annotations
| EntrezGene:100382420 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A1D6N6V8 | ncoils:Coil |
| InterPro:FCP1_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 |
| GO:GO:0016311 | GO:GO:0016787 | GO:GO:0016791 | GO:GO:0019538 | GO:GO:0040007 | GO:GO:0048589 |
| GO:GO:0070940 | InterPro:HAD-like_sf | InterPro:IPR004274 | InterPro:IPR014720 | ProteinID:ONM36329.1 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF10 | SMART:SM00577 |
| SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000844CCF5 | EnsemblPlantsGene:Zm00001d042804 | EnsemblPlants:Zm00001d042804_P001 | EnsemblPlants:Zm00001d042804_T001 |
| InterPro:dsRBD_dom | SEG:seg | : | : | : | : |
Description
RNA polymerase II C-terminal domain phosphatase-like 2
Coordinates
chr3:+:180448932..180463007
Molecular Weight (calculated)
86776.8 Da
IEP (calculated)
6.868
GRAVY (calculated)
-0.244
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPRPPPLG ALGGVVGGSG GAAPAAGAPA GVSMRMFHGE SFLGEMEVFP MKRDGEGGLP FPTNEIRVSH FSPASERCPP LAILQTIAPF SVRCKLQTKL
101: TPPNPGLQRL YLTCFNEFKS AVVVVGDEEL HLVAMPTKSG KVPCFWCCSA RSGLYAASVG MLNLRCLAIV FDLDETLIVA NTMKSFEDRI EMLSRRMDVE
201: DDPIRIAGMS AEIKRYIEDK ELLKEFIDMD TVTDNGKIVG TQKEEVQPMS GGQERVFRPV IRLPDRNAIL TRINPENRDT SVFVKLRPAW EELRSYLTAK
301: GRKRFEVYVC TMAERDYALE MWRLLDPEGN LISPQQLSER IFCLTIYCMA GSKKSLQNVF RDRRCHPKMA MVIDDRLNVW DDKDQHRVHV VPAYIPYYAP
401: QAEMANAVPV LCVARNVACN VRGGFFREFD ENLLRKVFEL YYENGLLDLP YAPDVGDYLV CEDTSFVPGN KDQAPIPEGM RGTEVEKRLN GQSYRWEQRE
501: GQQMPSSIRS PDDEGMPIRG TGGVRNIQPN GGSLAITPSV YVTVLQEIGR LCDSKVLFNN EKIGIGVGKT RDEAQVQAAE KALQNLENSY LSSGAPVAGV
601: PKKDSRKSPG RSGNGFLEDA TCSDNDISMR EPSGSALKLD HSNNVDTLSS IMSLIREHCL EDQHVVFRDE VQNSSPARNE EYHFQVELAG LILGRGVGSD
701: REAAKLLLRL PLRMGSVVAF IVLTVIMTDM WKPIVSLRRL WLAVLHRVVV VLAAEEALKT LKSTTDPQIK KYLRPVRCNG
101: TPPNPGLQRL YLTCFNEFKS AVVVVGDEEL HLVAMPTKSG KVPCFWCCSA RSGLYAASVG MLNLRCLAIV FDLDETLIVA NTMKSFEDRI EMLSRRMDVE
201: DDPIRIAGMS AEIKRYIEDK ELLKEFIDMD TVTDNGKIVG TQKEEVQPMS GGQERVFRPV IRLPDRNAIL TRINPENRDT SVFVKLRPAW EELRSYLTAK
301: GRKRFEVYVC TMAERDYALE MWRLLDPEGN LISPQQLSER IFCLTIYCMA GSKKSLQNVF RDRRCHPKMA MVIDDRLNVW DDKDQHRVHV VPAYIPYYAP
401: QAEMANAVPV LCVARNVACN VRGGFFREFD ENLLRKVFEL YYENGLLDLP YAPDVGDYLV CEDTSFVPGN KDQAPIPEGM RGTEVEKRLN GQSYRWEQRE
501: GQQMPSSIRS PDDEGMPIRG TGGVRNIQPN GGSLAITPSV YVTVLQEIGR LCDSKVLFNN EKIGIGVGKT RDEAQVQAAE KALQNLENSY LSSGAPVAGV
601: PKKDSRKSPG RSGNGFLEDA TCSDNDISMR EPSGSALKLD HSNNVDTLSS IMSLIREHCL EDQHVVFRDE VQNSSPARNE EYHFQVELAG LILGRGVGSD
701: REAAKLLLRL PLRMGSVVAF IVLTVIMTDM WKPIVSLRRL WLAVLHRVVV VLAAEEALKT LKSTTDPQIK KYLRPVRCNG
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.