Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029743_P001 | Maize | cytosol | 11.54 | 96.52 |
| EES05486 | Sorghum | cytosol | 91.16 | 93.9 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 86.38 | 88.69 |
| Os02t0639000-01 | Rice | cytosol | 81.5 | 83.4 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 79.52 | 82.08 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 79.63 | 81.32 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 79.31 | 81.08 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 79.31 | 81.0 |
| GSMUA_Achr11P... | Banana | cytosol | 2.91 | 71.79 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 59.15 | 59.96 |
| GSMUA_Achr11P... | Banana | nucleus | 56.86 | 59.01 |
| PGSC0003DMT400057635 | Potato | nucleus | 50.83 | 55.51 |
| Zm00001d031322_P001 | Maize | cytosol | 3.53 | 54.84 |
| Solyc02g078550.2.1 | Tomato | nucleus | 54.16 | 54.61 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 43.04 | 52.54 |
| KRH50009 | Soybean | nucleus | 52.08 | 52.41 |
| KRH20483 | Soybean | nucleus | 52.29 | 52.4 |
| KRH10835 | Soybean | nucleus | 51.25 | 51.46 |
| GSMUA_Achr11P... | Banana | extracellular | 9.77 | 51.37 |
| KRH21480 | Soybean | nucleus | 50.52 | 50.62 |
| Bra038764.1-P | Field mustard | nucleus | 49.79 | 50.58 |
| CDX98696 | Canola | nucleus | 48.96 | 50.54 |
| Bra020905.1-P | Field mustard | cytosol | 44.39 | 50.41 |
| CDY31421 | Canola | cytosol | 43.87 | 50.36 |
| CDX76438 | Canola | cytosol | 44.28 | 50.3 |
| CDX94046 | Canola | nucleus | 49.17 | 49.74 |
| AT4G21670.1 | Thale cress | nucleus | 49.27 | 49.02 |
| CDX79083 | Canola | nucleus | 41.79 | 46.8 |
| Bra013546.1-P | Field mustard | nucleus | 40.75 | 44.65 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 6.65 | 40.0 |
| Zm00001d042804_P001 | Maize | plastid | 31.81 | 39.23 |
Protein Annotations
| EntrezGene:100304282 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A1D6HEE3 | ProteinID:AQK73023.1 |
| InterPro:FCP1_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf | InterPro:IPR004274 |
| InterPro:IPR014720 | PFAM:PF00035 | PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 |
| PANTHER:PTHR23081:SF11 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI0008443913 |
| EnsemblPlantsGene:Zm00001d017373 | EnsemblPlants:Zm00001d017373_P001 | EnsemblPlants:Zm00001d017373_T001 | InterPro:dsRBD_dom | SEG:seg | : |
Description
RNA polymerase II C-terminal domain phosphatase-like 1
Coordinates
chr5:+:193765211..193776100
Molecular Weight (calculated)
107638.0 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.398
Length
962 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKSMVYFVN ISIGEVEVWP KGQASAGLAV AAWARDIRVD RLSPPSERCP PLAVMHTVAV AARCLVMESR PPVAADVASL PLVDMHAACL RDNKTAVVAL
101: GDEELHLVAM TSRRNLTNHA CFWGYKLPFG LYNSCLTMLN LRCLGIVFDL DETLVVANTS RSFEDRIDAL QRKLSNETDP QRRNGMLSEI KRYQDDKSIL
201: KQYIEGDQVY DDGKVYKAQP EIVPPLSDNQ QTMTRPVIRL QEKDIILTRI NPLIRDTSVL VRLRPAWEDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVRLHDRMVC VKSGLKKSLL NVFHDGSCHP GMALVIDDRL KVWDEKDQLR VHVVPAFTPY YAPQAEANCS IPVLCVARNV ACNVRGGFFK
401: DFDEGLLPRI SNVHYEDEVN DISSAPDVGN YLITEDENVA LVNGNRDSLP FDGMSDAEIE RRMKEANAQA FHQTATNFVM PVAPAQNFVS SSVAPLAPPL
501: SMMPPPFSQP VVQPGFSDPL QGSPAREEGE VPESELDPDT RRRLLILQHG QDTRDPTPPH PAIPPVQVPV PPVQPHGNWF PTEDGINPSN LSRGSAGFTV
601: ESDSMPYEKK QPPHPSFFHG GDSPMSSDRF GYQNQRFPSQ LPHTEDHHML QNHAPPKYRS FSGEELATRH VPSSQRNHIE SGRHFSQYAG TSAGVLEGIA
701: VKCGSKVEYR STLCDTAELQ FSIEVWIVGE KFGEGIGRTR REAQRQAAEM SLRNLANKYL SSDPNKLTDM KQDAFGSNRN IFGYSGNTRD DMLPLSSTSE
801: ESRFMKMEEN NSRKTGDSVT ALKELCTVEG YNLVFQACPS PADGLVGKES YAQVQIGRQI LGKGVGLTWE EAKLQVMSSL ILTDFVFLLL PYFPCLKKIW
901: IHLAADEALG TLRSMLGQLG HRRSGSPRSL APNFNKRFKP DFPRTVQRVP YGTYSRIEGH AP
101: GDEELHLVAM TSRRNLTNHA CFWGYKLPFG LYNSCLTMLN LRCLGIVFDL DETLVVANTS RSFEDRIDAL QRKLSNETDP QRRNGMLSEI KRYQDDKSIL
201: KQYIEGDQVY DDGKVYKAQP EIVPPLSDNQ QTMTRPVIRL QEKDIILTRI NPLIRDTSVL VRLRPAWEDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVRLHDRMVC VKSGLKKSLL NVFHDGSCHP GMALVIDDRL KVWDEKDQLR VHVVPAFTPY YAPQAEANCS IPVLCVARNV ACNVRGGFFK
401: DFDEGLLPRI SNVHYEDEVN DISSAPDVGN YLITEDENVA LVNGNRDSLP FDGMSDAEIE RRMKEANAQA FHQTATNFVM PVAPAQNFVS SSVAPLAPPL
501: SMMPPPFSQP VVQPGFSDPL QGSPAREEGE VPESELDPDT RRRLLILQHG QDTRDPTPPH PAIPPVQVPV PPVQPHGNWF PTEDGINPSN LSRGSAGFTV
601: ESDSMPYEKK QPPHPSFFHG GDSPMSSDRF GYQNQRFPSQ LPHTEDHHML QNHAPPKYRS FSGEELATRH VPSSQRNHIE SGRHFSQYAG TSAGVLEGIA
701: VKCGSKVEYR STLCDTAELQ FSIEVWIVGE KFGEGIGRTR REAQRQAAEM SLRNLANKYL SSDPNKLTDM KQDAFGSNRN IFGYSGNTRD DMLPLSSTSE
801: ESRFMKMEEN NSRKTGDSVT ALKELCTVEG YNLVFQACPS PADGLVGKES YAQVQIGRQI LGKGVGLTWE EAKLQVMSSL ILTDFVFLLL PYFPCLKKIW
901: IHLAADEALG TLRSMLGQLG HRRSGSPRSL APNFNKRFKP DFPRTVQRVP YGTYSRIEGH AP
001: MNRLGHKSVV YHGDLRLGEL DVNHVSSSHE FRFPNDEIRI HHLSPAGERC PPLAILQTIA SFAVRCKLES SAPVKSQELM HLHAVCFHEL KTAVVMLGDE
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL VLRK
101: EIHLVAMPSK EKKFPCFWCF SVPSGLYDSC LRMLNTRCLS IVFDLDETLI VANTMKSFED RIEALKSWIS REMDPVRING MSAELKRYMD DRMLLKQYID
201: NDYAFDNGVL LKAQPEEVRP TSDGQEKVCR PVIRLPEKNT VLTRIKPEIR DTSVLVKLRP AWEELRSYLT AKTRKRFEVY VCTMAERDYA LEMWRLLDPE
301: AHLISLKELR DRIVCVKPDA KKSLLSVFNG GICHPKMAMV IDDRMKVWED KDQPRVHVVS AYLPYYAPQA ETALVVPHLC VARNVACNVR GYFFKEFDES
401: LMSSISLVYY EDDVENLPPS PDVSNYVVIE DPGFASNGNI NAPPINEGMC GGEVERRLNQ AAAADHSTLP ATSNAEQKPE TPKPQIAVIP NNASTATAAA
501: LLPSHKPSLL GAPRRDGFTF SDGGRPLMMR PGVDIRNQNF NQPPILAKIP MQPPSSSMHS PGGWLVDDEN RPSFPGRPSG LYPSQFPHGT PGSAPVGPFA
601: HPSHLRSEEV AMDDDLKRQN PSRQTTEGGI SQNHLVSNGR EHHTDGGKSN GGQSHLFVSA LQEIGRRCGS KVEFRTVIST NKELQFSVEV LFTGEKIGIG
701: MAKTKKDAHQ QAAENALRSL AEKYVAHVAP LARETEKGPE NDNGFLWESS EDVSNKGLEE EAPKENISEL VLRK
Arabidopsis Description
CPL2Carboxyl-terminal domain (Ctd) phosphatase-like 2 [Source:UniProtKB/TrEMBL;Acc:F4K802]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.