Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH20483 | Soybean | nucleus | 95.92 | 95.52 |
| Zm00001d029743_P001 | Maize | cytosol | 10.25 | 85.22 |
| KRH10835 | Soybean | nucleus | 77.2 | 77.04 |
| KRH21480 | Soybean | nucleus | 76.57 | 76.25 |
| GSMUA_Achr11P... | Banana | cytosol | 2.82 | 69.23 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 54.81 | 66.5 |
| PGSC0003DMT400057635 | Potato | nucleus | 59.1 | 64.13 |
| Solyc02g078550.2.1 | Tomato | nucleus | 63.6 | 63.73 |
| Bra020905.1-P | Field mustard | cytosol | 52.3 | 59.03 |
| CDX94046 | Canola | nucleus | 58.37 | 58.68 |
| CDX76438 | Canola | cytosol | 51.67 | 58.32 |
| AT4G21670.1 | Thale cress | nucleus | 58.79 | 58.12 |
| CDY31421 | Canola | cytosol | 50.94 | 58.11 |
| Bra038764.1-P | Field mustard | nucleus | 57.53 | 58.08 |
| CDX98696 | Canola | nucleus | 56.49 | 57.94 |
| GSMUA_Achr11P... | Banana | nucleus | 56.07 | 57.82 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 57.01 | 57.43 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 54.39 | 55.79 |
| GSMUA_Achr11P... | Banana | extracellular | 10.67 | 55.74 |
| CDX79083 | Canola | nucleus | 49.79 | 55.41 |
| EES05486 | Sorghum | cytosol | 53.66 | 54.93 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 53.87 | 54.73 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 53.87 | 54.67 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 53.87 | 54.67 |
| Os02t0639000-01 | Rice | cytosol | 53.66 | 54.57 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 53.03 | 53.48 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 49.79 | 53.42 |
| KXG26770 | Sorghum | nucleus | 52.3 | 53.08 |
| Os04t0529500-02 | Rice | extracellular | 51.36 | 52.63 |
| Zm00001d017373_P001 | Maize | nucleus | 52.41 | 52.08 |
| Bra013546.1-P | Field mustard | nucleus | 47.8 | 52.05 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 50.63 | 51.65 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 51.15 | 51.53 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 51.05 | 51.48 |
| KRH49327 | Soybean | nucleus | 39.02 | 44.46 |
| KRH00194 | Soybean | nucleus | 38.91 | 44.13 |
Protein Annotations
| EntrezGene:100819722 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | EMBL:ACUP02004653 | InterPro:FCP1_dom |
| EnsemblPlantsGene:GLYMA_07G194800 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016591 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf | UniProt:I1KLI0 |
| InterPro:IPR004274 | InterPro:IPR014720 | EnsemblPlants:KRH50009 | ProteinID:KRH50009 | ProteinID:KRH50009.1 | PFAM:PF00035 |
| PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
| SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI0002963C5B | InterPro:dsRBD_dom | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:+:36325895..36337168
Molecular Weight (calculated)
106739.0 Da
IEP (calculated)
6.972
GRAVY (calculated)
-0.445
Length
956 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMYKSVVYQ GEVVVGEVDV YPEENNNYKN FHVKEIRISH FSQPSERCPP LAVLHTVTSC GVCFKMESKT QQQDGLFQLH SLCIRENKTA VMPLGGEEIH
101: LVAMHSRNVD RPCFWGFIVA LGLYDSCLVM LNLRCLGIVF DLDETLIVAN TMRSFEDRID ALQRKINSEV DPQRISGMQA EVKRYQDDKN ILKQYAENDQ
201: VVDNGRVIKV QSEIVPALSD SHQPIVRPLI RLQDKNIILT RINPQIRDTS VLVRLRPAWE DLRSYLTARG RKRFEVYVCT MAERDYALEM WRLLDPDSNL
301: INSKELLGRI VCVKSGLKKS LFNVFQDGLC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYAPQAEAS NTIPVLCVAR NVACNVRGGF FKDFDDGLLQ
401: KIPQIAYEDD IKDIPSPPDV SNYLVSEDDG SISNGHRDPF LFDGMADAEV ERKLKDALSA ASTIPVTTAN LDPRLTSLQY TMVPSGSVPP PTAQASMMPF
501: PHVQFPQPAT LVKPMGQAAP SEPSLHSSPA REEGEVPESE LDPDTRRRLL ILQHGQDTRD HASAEPPFPV RHPVQTSAPH VPSSRGVWFP AEEEIGSQPL
601: NRVVPKEFPV DSGPLGIAKP RPHHPSFFSK VESSISSDRI LHDSHQRLPK EMYHRDDRPR LNHMLSSYRS FSGDDIPFSR SFSSHRDLDS ESGHSVLHAD
701: TPVAVLQEIA LKCGTKVDFI SSLVASTELQ FSMEAWFSGK KIGHRVGRTR KEAQNKAAED SIKHLADIYL SSAKDEPGST YGDVSGFPNV NDSGYMGIAS
801: SLGNQPLSKE DSASFSTASP SRVLDPRLDV SKRSMGSISS LKELCMMEGL DVNFLSAPAP VSTNSVQKDE VHAQVEIDGK VFGKGIGLTW DEAKMQAAEK
901: ALGSLRSKLG QSIQKRQSSP RPHQGFSNKR LKQEYPRPMQ RMPSSARYPR NAPPIP
101: LVAMHSRNVD RPCFWGFIVA LGLYDSCLVM LNLRCLGIVF DLDETLIVAN TMRSFEDRID ALQRKINSEV DPQRISGMQA EVKRYQDDKN ILKQYAENDQ
201: VVDNGRVIKV QSEIVPALSD SHQPIVRPLI RLQDKNIILT RINPQIRDTS VLVRLRPAWE DLRSYLTARG RKRFEVYVCT MAERDYALEM WRLLDPDSNL
301: INSKELLGRI VCVKSGLKKS LFNVFQDGLC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYAPQAEAS NTIPVLCVAR NVACNVRGGF FKDFDDGLLQ
401: KIPQIAYEDD IKDIPSPPDV SNYLVSEDDG SISNGHRDPF LFDGMADAEV ERKLKDALSA ASTIPVTTAN LDPRLTSLQY TMVPSGSVPP PTAQASMMPF
501: PHVQFPQPAT LVKPMGQAAP SEPSLHSSPA REEGEVPESE LDPDTRRRLL ILQHGQDTRD HASAEPPFPV RHPVQTSAPH VPSSRGVWFP AEEEIGSQPL
601: NRVVPKEFPV DSGPLGIAKP RPHHPSFFSK VESSISSDRI LHDSHQRLPK EMYHRDDRPR LNHMLSSYRS FSGDDIPFSR SFSSHRDLDS ESGHSVLHAD
701: TPVAVLQEIA LKCGTKVDFI SSLVASTELQ FSMEAWFSGK KIGHRVGRTR KEAQNKAAED SIKHLADIYL SSAKDEPGST YGDVSGFPNV NDSGYMGIAS
801: SLGNQPLSKE DSASFSTASP SRVLDPRLDV SKRSMGSISS LKELCMMEGL DVNFLSAPAP VSTNSVQKDE VHAQVEIDGK VFGKGIGLTW DEAKMQAAEK
901: ALGSLRSKLG QSIQKRQSSP RPHQGFSNKR LKQEYPRPMQ RMPSSARYPR NAPPIP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.