CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH42483
KRH50009
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	KRH42483	AT2G01950.1	19000166
AT2G28840.1	KRH58580	AT2G01950.1	19000166
AT2G28840.1	KRH10835	AT4G21670.1	18541146
AT2G28840.1	KRH20483	AT4G21670.1	18541146
AT2G28840.1	KRH21480	AT4G21670.1	18541146
AT2G28840.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23057	Soybean	nucleus	96.4	94.9
KRH29806	Soybean	nucleus	81.08	80.54
KRH24806	Soybean	nucleus	80.86	80.31
VIT_06s0004g04550.t01	Wine grape	nucleus	72.52	79.7
PGSC0003DMT400001171	Potato	nucleus	71.85	71.52
Solyc11g066020.1.1	Tomato	nucleus	71.62	71.3
CDX83303	Canola	cytosol	71.85	70.11
CDY47891	Canola	cytosol	71.62	69.89
Bra011923.1-P	Field mustard	nucleus	71.85	69.8
PGSC0003DMT400077953	Potato	nucleus	69.37	69.53
CDY15789	Canola	cytosol	71.4	69.52
Solyc06g076050.2.1	Tomato	nucleus	69.37	68.9
AT2G28840.1	Thale cress	cytosol	70.72	68.86
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	67.79	68.41
Bra035664.1-P	Field mustard	nucleus	68.69	67.63
CDX95759	Canola	cytosol	70.72	67.38
CDX77214	Canola	cytosol	68.69	67.33
GSMUA_Achr10P...	Banana	nucleus	66.22	67.12
GSMUA_Achr7P18180_001	Banana	cytosol	65.32	65.76
KRG99867	Soybean	nucleus	65.32	65.76
Os05t0112000-01	Rice	cytosol	65.09	64.22
CDY31737	Canola	cytosol	68.69	63.94
KRH46816	Soybean	cytosol	63.06	63.93
Bra000480.1-P	Field mustard	plastid	70.27	63.29
TraesCS1D01G035300.1	Wheat	cytosol	63.06	62.22
TraesCS1A01G034300.2	Wheat	cytosol	62.39	61.42
TraesCS4B01G207400.1	Wheat	cytosol	60.81	60.4
EES18892	Sorghum	nucleus	62.84	60.0
TraesCS4D01G208300.1	Wheat	cytosol	60.14	59.07
TraesCS4A01G097000.2	Wheat	cytosol	60.14	58.81
EER92481	Sorghum	nucleus	58.56	58.04
GSMUA_Achr6P33430_001	Banana	nucleus	63.96	57.61
Os03t0275300-01	Rice	nucleus	60.14	57.42
TraesCS1B01G050200.3	Wheat	cytosol	62.84	57.41
Os01t0974400-01	Rice	cytosol	56.53	56.28
TraesCS3D01G537900.1	Wheat	cytosol	57.88	56.11
TraesCS3A01G532700.1	Wheat	cytosol	58.11	55.84
TraesCS3B01G609500.1	Wheat	cytosol	58.11	55.6
EES02150	Sorghum	cytosol	59.68	54.75
KRH46162	Soybean	cytosol	39.41	50.58
Zm00001d025843_P001	Maize	plastid	23.2	50.0
TraesCS7D01G304700.1	Wheat	cytosol	22.97	50.0
HORVU1Hr1G043970.3	Barley	plastid	24.32	38.16
KRH18952	Soybean	cytosol, nucleus, plastid	30.18	26.38
KRH09105	Soybean	nucleus	29.95	26.03
KRG91461	Soybean	cytosol, nucleus, plastid	29.73	25.78
KRH38558	Soybean	nucleus	29.5	25.64
KRH35355	Soybean	nucleus	29.5	25.59
KRH02947	Soybean	cytosol, nucleus, plastid	29.28	25.49

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100820268	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:ACUP02009129	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_15G039100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1MDG1	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlants:KRH10274	ProteinID:KRH10274	ProteinID:KRH10274.1	PFAM:PF12796	PFAM:PF13637	PFAM:PF13857
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI000233B048	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr15:-:3078440..3081975

Molecular Weight (calculated)

47870.0 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.163

Length

444 amino acids

Sequence
(BLAST)

001: MGQSLSCSGN YDHGLFTAVQ HGDLEIVTTL LDSDPSLLHQ TTLYDRHSPL HIAATNDQIE ILSKLLDGSL NPDVLNRHKQ TPLMLAAMHG NIACVEKLLQ
101: AGANVLMFDT SYGRTCLHYA AYYGHSSCLK AILSSAQSSP VSASWGFSRF VNIRDGKGAT PLHLAARQRR SECVHILLDS GALVCASTGG YGCPGSTPLH
201: LAARGGSIDC IRELLAWGAD RLQRDASGRI PYMVALKHKH GACASLLNPT SAEPLVWPSP LKFISELNPE AKALLEQALM DANREREKNI LKGSSYSLPS
301: PSHSDGVADN MSEVSESELC CICFEQVCTI EVQNCGHQMC AQCTLALCCH NKPNPATACL TPPVCPFCRS TITRLVVVKT ECHDETDQDS ADINCSKLSK
401: SSRKLRHLND SGSSSFKGLS SVSSFGKLGS RSSGRIAAEW LDKQ

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.