Factsheet for GSMUA_Achr6P33430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P15100_001
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	64.3	72.05
GSMUA_Achr7P18180_001	Banana	cytosol	64.3	71.88
GSMUA_Achr10P...	Banana	nucleus	62.27	70.09
VIT_06s0004g04550.t01	Wine grape	nucleus	56.8	69.31
Os05t0112000-01	Rice	cytosol	59.43	65.11
VIT_08s0007g00200.t01	Wine grape	nucleus	57.81	64.19
KRH29806	Soybean	nucleus	58.01	63.98
KRH10274	Soybean	nucleus	57.61	63.96
Solyc06g076050.2.1	Tomato	nucleus	57.81	63.76
PGSC0003DMT400077953	Potato	nucleus	57.2	63.66
Solyc11g066020.1.1	Tomato	nucleus	57.4	63.45
KRH23057	Soybean	nucleus	58.01	63.41
TraesCS1D01G035300.1	Wheat	cytosol	57.81	63.33
PGSC0003DMT400001171	Potato	nucleus	57.2	63.23
TraesCS1A01G034300.2	Wheat	cytosol	57.81	63.19
KRH24806	Soybean	nucleus	57.0	62.86
EES18892	Sorghum	nucleus	59.03	62.58
KRH46816	Soybean	cytosol	54.16	60.96
TraesCS4B01G207400.1	Wheat	cytosol	55.17	60.85
KRG99867	Soybean	nucleus	54.36	60.77
Bra035664.1-P	Field mustard	nucleus	55.58	60.75
CDY15789	Canola	cytosol	56.19	60.75
CDY47891	Canola	cytosol	55.98	60.66
Bra011923.1-P	Field mustard	nucleus	56.19	60.61
CDX77214	Canola	cytosol	55.38	60.26
CDX83303	Canola	cytosol	55.38	60.0
AT2G28840.1	Thale cress	cytosol	55.38	59.87
TraesCS4D01G208300.1	Wheat	cytosol	54.56	59.51
EER92481	Sorghum	nucleus	53.75	59.15
TraesCS4A01G097000.2	Wheat	cytosol	54.36	59.03
TraesCS1B01G050200.3	Wheat	cytosol	58.01	58.85
CDX95759	Canola	cytosol	55.58	58.8
TraesCS3D01G537900.1	Wheat	cytosol	54.56	58.73
Os03t0275300-01	Rice	nucleus	55.17	58.49
TraesCS3A01G532700.1	Wheat	cytosol	54.56	58.23
Solyc09g010690.2.1	Tomato	nucleus	52.74	57.65
TraesCS3B01G609500.1	Wheat	cytosol	54.16	57.54
CDY31737	Canola	cytosol	54.97	56.81
Os01t0974400-01	Rice	cytosol	50.51	55.83
Bra000480.1-P	Field mustard	plastid	54.97	54.97
EES02150	Sorghum	cytosol	52.13	53.1
Zm00001d025843_P001	Maize	plastid	21.5	51.46
PGSC0003DMT400023028	Potato	nucleus	52.74	50.1
TraesCS7D01G304700.1	Wheat	cytosol	20.69	50.0
KRH46162	Soybean	cytosol	33.67	47.98
HORVU1Hr1G043970.3	Barley	plastid	22.31	38.87
GSMUA_Achr11P...	Banana	plastid	16.02	29.59
GSMUA_Achr1P10240_001	Banana	nucleus	23.73	26.35
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	24.34	26.26
GSMUA_Achr3P04900_001	Banana	nucleus	24.14	24.84
GSMUA_Achr11P...	Banana	cytosol	25.56	24.47
GSMUA_Achr4P02080_001	Banana	nucleus	24.34	23.9
GSMUA_Achr11P...	Banana	mitochondrion	11.36	19.31

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G33430_001	EnsemblPlants:GSMUA_Achr6P33430_001	EnsemblPlants:GSMUA_Achr6T33430_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0TCD6
PFAM:PF12796	PFAM:PF13857	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002958EEA
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

E3 ubiquitin-protein ligase XB3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G33430_001]

Coordinates

chr6:+:32470378..32473638

Molecular Weight (calculated)

53565.1 Da

IEP (calculated)

7.383

GRAVY (calculated)

-0.078

Length

493 amino acids

Sequence
(BLAST)

001: MGQGMSCACS GYDHDFFAAV QGGDLRAVES FIRSDPSLVF RTTIYDGLSA LHVLSMILDR SVNPDTVNRH KQTPLMLAVM HGKFACVQKL LEAGANILTF
101: DSLNGRTCLH HAAYYGYADC LQVILSAAQS ATVADSWGFR RFVNVRDSSG ATPLHLAARQ TKPDCVHILL DNGALVSATT GGYCCPGSTA LHLAARGGSL
201: DCVRELLAWG ANRLQRDSSG RIPYAVALKR NHGACAALLN PSAAEPLVWP SPLKFISELD PDAKALLEAA LVVANRKREK KILKGIAYSL PSPTHSDEST
301: DDDTPEESDS ELCYICFDQV CTIKVQDCGH QMCAHCMLAL CCHNKPSSMS LCSSSPTCPF CRSGISRLVI AKNRVKDEGD KDTISKLRRS RRSTNFSEGS
401: SSLKGLSSVI GSCGKMTLGS GHISDGNDMA DKPSDEYYML LCEERLQMGS ENSAGFCIIN NYSFSMFFSY PLSMRVCLSI LHYNALMYFK NSL

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.