Factsheet for TraesCS3D01G537900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G609500.1	Wheat	cytosol	98.03	96.77
TraesCS7D01G304700.1	Wheat	cytosol	39.96	89.71
HORVU3Hr1G116350.2	Barley	plastid	77.73	76.89
TraesCS1D01G035300.1	Wheat	cytosol	69.21	70.44
Zm00001d041951_P001	Maize	cytosol	64.19	70.17
Os01t0974400-01	Rice	cytosol	67.25	69.06
EES02150	Sorghum	cytosol	68.56	64.88
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	61.14	63.64
GSMUA_Achr10P...	Banana	nucleus	60.7	63.47
GSMUA_Achr7P18180_001	Banana	cytosol	60.92	63.27
TraesCS4D01G208300.1	Wheat	cytosol	60.92	61.73
VIT_06s0004g04550.t01	Wine grape	nucleus	54.15	61.39
Solyc11g066020.1.1	Tomato	nucleus	58.08	59.64
PGSC0003DMT400001171	Potato	nucleus	57.64	59.19
VIT_08s0007g00200.t01	Wine grape	nucleus	56.55	58.33
KRH29806	Soybean	nucleus	56.77	58.17
KRH10274	Soybean	nucleus	56.11	57.88
PGSC0003DMT400077953	Potato	nucleus	55.9	57.79
KRH23057	Soybean	nucleus	56.77	57.65
CDY15789	Canola	cytosol	56.99	57.24
KRH24806	Soybean	nucleus	55.68	57.05
Solyc06g076050.2.1	Tomato	nucleus	55.68	57.05
CDY47891	Canola	cytosol	56.55	56.92
Bra011923.1-P	Field mustard	nucleus	56.55	56.67
Bra035664.1-P	Field mustard	nucleus	55.68	56.54
AT2G28840.1	Thale cress	cytosol	55.9	56.14
CDX77214	Canola	cytosol	55.46	56.07
CDX83303	Canola	cytosol	55.46	55.82
KRG99867	Soybean	nucleus	53.49	55.56
KRH46816	Soybean	cytosol	53.06	55.48
GSMUA_Achr6P33430_001	Banana	nucleus	58.73	54.56
CDX95759	Canola	cytosol	55.46	54.51
Solyc09g010690.2.1	Tomato	nucleus	52.4	53.22
CDY31737	Canola	cytosol	55.24	53.04
Bra000480.1-P	Field mustard	plastid	54.15	50.3
PGSC0003DMT400023028	Potato	nucleus	52.18	46.05
KRH46162	Soybean	cytosol	34.06	45.09
TraesCS7D01G055500.1	Wheat	cytosol	27.29	28.41
TraesCS7D01G147400.1	Wheat	cytosol	28.6	27.23
TraesCS1D01G187300.1	Wheat	cytosol	30.35	26.73
TraesCS6D01G335000.2	Wheat	cytosol	27.95	25.6

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF20	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3D01G537900	EnsemblPlants:TraesCS3D01G537900.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd00204
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:610929362..610931074

Molecular Weight (calculated)

48424.6 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.123

Length

458 amino acids

Sequence
(BLAST)

001: MGHGLSCSRD GDEHDFFRAA QAGDVDALDG LLAADPALVR RATIYDRLTA LHVSAANGCL PAVDMLLARG VRPDVVDRRK RTPLMLAATH GHIDCALALL
101: RAGANILMFD SVNARTCLHH AAYYGHADCL RAILTAARTT PVADSWGFVR FVNVRDEHGA TPLHVAARQG RPECVHLLLE SGAIVSAPTG SYGFPGSTAL
201: HLAARGGSLE CVRELLAWGA DRVHRDSAGR IAYSVAMKRG HGACAALLNP AAAEPMVWPS PLKFIGELGA DARALLEAAL AEANREREKK ILKGTKYSDS
301: SSPALSDAGA GDDDEVDDQE DEEVCSICFE QACSIQVEDC GHRMCAACTL ALCCHSKPNP ATLTLQPPAC PFCRSCISRL VVADSKAKAV AVAGAGDEAE
401: EKPRLSRRRS RRSREGSSSF KGLSSAMGSL SSKIGRGSGR LAGDGDGAFL DKLEHDLP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.