Factsheet for GSMUA_Achr7P18180_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P15100_001
GSMUA_Achr8P14120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr11P...	AT4G21670.1	18541146
AT2G28840.1	GSMUA_Achr8P14120_001	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	81.18	81.36
VIT_06s0004g04550.t01	Wine grape	nucleus	66.89	73.02
GSMUA_Achr10P...	Banana	nucleus	72.11	72.6
Os05t0112000-01	Rice	cytosol	70.07	68.67
Solyc11g066020.1.1	Tomato	nucleus	69.39	68.61
PGSC0003DMT400001171	Potato	nucleus	68.71	67.94
VIT_08s0007g00200.t01	Wine grape	nucleus	68.25	67.79
PGSC0003DMT400077953	Potato	nucleus	67.8	67.49
TraesCS1D01G035300.1	Wheat	cytosol	68.25	66.89
TraesCS1A01G034300.2	Wheat	cytosol	68.25	66.74
EES18892	Sorghum	nucleus	70.07	66.45
Solyc06g076050.2.1	Tomato	nucleus	67.12	66.22
KRH10274	Soybean	nucleus	65.76	65.32
KRH29806	Soybean	nucleus	65.99	65.1
KRH23057	Soybean	nucleus	66.44	64.97
Bra035664.1-P	Field mustard	nucleus	65.99	64.52
KRG99867	Soybean	nucleus	64.4	64.4
GSMUA_Achr6P33430_001	Banana	nucleus	71.88	64.3
KRH24806	Soybean	nucleus	65.08	64.21
AT2G28840.1	Thale cress	cytosol	66.21	64.04
KRH46816	Soybean	cytosol	63.49	63.93
CDX77214	Canola	cytosol	65.31	63.58
Bra011923.1-P	Field mustard	nucleus	65.53	63.24
CDY15789	Canola	cytosol	65.31	63.16
CDY47891	Canola	cytosol	65.08	63.08
CDX83303	Canola	cytosol	64.85	62.86
TraesCS4B01G207400.1	Wheat	cytosol	63.27	62.42
TraesCS1B01G050200.3	Wheat	cytosol	67.8	61.52
TraesCS4D01G208300.1	Wheat	cytosol	63.04	61.5
TraesCS4A01G097000.2	Wheat	cytosol	62.81	61.01
CDX95759	Canola	cytosol	64.4	60.94
TraesCS3D01G537900.1	Wheat	cytosol	63.27	60.92
CDY31737	Canola	cytosol	65.76	60.8
TraesCS3A01G532700.1	Wheat	cytosol	63.49	60.61
TraesCS3B01G609500.1	Wheat	cytosol	63.49	60.34
EER92481	Sorghum	nucleus	61.22	60.27
Solyc09g010690.2.1	Tomato	nucleus	60.54	59.2
Os03t0275300-01	Rice	nucleus	61.22	58.06
Os01t0974400-01	Rice	cytosol	57.82	57.17
Bra000480.1-P	Field mustard	plastid	63.27	56.59
EES02150	Sorghum	cytosol	60.77	55.37
PGSC0003DMT400023028	Potato	nucleus	60.09	51.06
TraesCS7D01G304700.1	Wheat	cytosol	23.58	50.98
Zm00001d025843_P001	Maize	plastid	23.36	50.0
KRH46162	Soybean	cytosol	39.0	49.71
HORVU1Hr1G043970.3	Barley	plastid	25.4	39.58
GSMUA_Achr11P...	Banana	plastid	19.95	32.96
GSMUA_Achr1P10240_001	Banana	nucleus	27.66	27.48
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	27.66	26.7
GSMUA_Achr3P04900_001	Banana	nucleus	28.12	25.89
GSMUA_Achr11P...	Banana	cytosol	30.16	25.83
GSMUA_Achr4P02080_001	Banana	nucleus	28.8	25.3
GSMUA_Achr11P...	Banana	mitochondrion	12.93	19.66

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr7G18180_001	EnsemblPlants:GSMUA_Achr7P18180_001	EnsemblPlants:GSMUA_Achr7T18180_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0TIK5
PFAM:PF00023	PFAM:PF12796	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002951376
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

E3 ubiquitin-protein ligase XB3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18180_001]

Coordinates

chr7:-:20979656..20982563

Molecular Weight (calculated)

47390.5 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.195

Length

441 amino acids

Sequence
(BLAST)

001: MGQGVSCAGS SYEHGFFSAV QDGHLETVRS AIDEDPSLLR RATIYDRLSA LHIAAANGRV EVLTLVLEKY GNPDIANRHK QTPLMLAAMH GKIACVQKLL
101: EAGANILMFD SLNGRTCLHH AAYYGHSNCL QAIISAARST GVADSWGFAR FVNVRDDNGA TPLHLAAKQR RPDCVHILLD HGALVCASTG GGYGYPGSTP
201: LHLAAHGGSL DCVRKLLAWG ADRLQRDSAG RIPYAVALKR NHGACAALLN PSAAEPLVWP SPLKVISELG PDAKALLEVA LTEANKEREK KILEGTKYSL
301: SPPAHWDAAI PDDSSEASDT ELCSICFDQV CTIEVKDCGH QMCAHCMLAL CCHNKPNPTT LCLPSPSCPF CRCNIARLVV AKTHDKDEGE KGTTSKLRRS
401: RRSHNFSAES SSFKTSAMGS FSKMSRGTGC ITDSEDMVDK P

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.