Factsheet for GSMUA_Achr1P07900_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	33.04	56.55
Os06t0128600-01	Rice	cytosol, mitochondrion	7.88	55.38
Os06t0128700-01	Rice	cytosol	14.88	54.4
KXG19180	Sorghum	cytosol	46.17	51.97
Zm00001d045499_P001	Maize	cytosol	44.86	48.24
GSMUA_Achr11P...	Banana	cytosol	54.05	47.96
Zm00001d036014_P001	Maize	cytosol	42.01	46.94
TraesCS7A01G060700.1	Wheat	cytosol	43.76	45.35
TraesCS7D01G055500.1	Wheat	cytosol	43.33	45.0
TraesCS4A01G429100.1	Wheat	cytosol	43.11	44.87
GSMUA_Achr1P10240_001	Banana	nucleus	42.67	43.92
GSMUA_Achr3P04900_001	Banana	nucleus	44.86	42.8
GSMUA_Achr4P02080_001	Banana	nucleus	46.17	42.03
GSMUA_Achr11P...	Banana	mitochondrion	21.88	34.48
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	27.79	28.86
GSMUA_Achr7P18180_001	Banana	cytosol	26.7	27.66
GSMUA_Achr10P...	Banana	nucleus	26.48	27.63
HORVU7Hr1G011250.3	Barley	mitochondrion, nucleus	25.38	26.91
GSMUA_Achr6P33430_001	Banana	nucleus	26.26	24.34

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr1G07900_001	EnsemblPlants:GSMUA_Achr1P07900_001	EnsemblPlants:GSMUA_Achr1T07900_001
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0RXZ8
PFAM:PF00023	PFAM:PF12796	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF35	SMART:SM00184	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002960BAE
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Probable E3 ubiquitin-protein ligase XBOS33 [Source:GMGC_GENE;Acc:GSMUA_Achr1G07900_001]

Coordinates

chr1:-:6082395..6085804

Molecular Weight (calculated)

48532.0 Da

IEP (calculated)

6.856

GRAVY (calculated)

0.053

Length

457 amino acids

Sequence
(BLAST)

001: MGNCLWCSAS GKRLMTAARD GDVEEARMLL EMRPGLAKYS TFGGLSSPLH VAASGGHSEI AMMLLEYGAD VNFRNIYGRT PLMEACNNGY WEVVQTLLLY
101: KCNVSRAEYL NGWTALHFAA QGGHIPCIRL LAADFAPAVP DAATNSSEDE TQRNLPNSSY DQHSLSRFIK KTANCGITAL HLAALNGNVD CVHLLLDLHA
201: DVSATALSQN TSSAASIGAG STPLHYAAYS GNLKCCQAIH LGASRSAVNG HGWLPVDVAR IYGCDELVPV LKPNSNQTIP VFPISCLSLP LISILKIARE
301: YGLHSSTVPS DDSDLCAVCL ENTCAVAAEG CGHEFCTRCT LSLSSTCSMA PEMSAPPGSI PCPLCREGIV AFVRLPTLLV KDLSLKGNSD SHSLNQTAIA
401: IRSEFCKKQS AVVPSEAIGP ISCPPHIPPV ISSCSRHQHT GRAEKTSCST SVHYGSL

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.