Factsheet for TraesCS4A01G429100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G055500.1	Wheat	cytosol	96.13	95.91
TraesCS7A01G060700.1	Wheat	cytosol	95.9	95.46
Os06t0128600-01	Rice	cytosol, mitochondrion	11.39	76.92
Os06t0128700-01	Rice	cytosol	21.64	76.0
KXG19180	Sorghum	cytosol	66.06	71.43
Zm00001d036014_P001	Maize	cytosol	62.87	67.48
Zm00001d045499_P001	Maize	cytosol	64.92	67.06
HORVU7Hr1G011250.3	Barley	mitochondrion, nucleus	47.84	48.72
GSMUA_Achr1P07900_001	Banana	cytosol, nucleus, plastid	44.87	43.11
TraesCS1A01G189100.1	Wheat	cytosol	51.03	43.08
TraesCS7A01G145900.1	Wheat	cytosol	39.64	36.17
TraesCS6A01G352300.1	Wheat	cytosol	40.55	35.6
TraesCS4A01G097000.2	Wheat	cytosol	28.25	27.31
TraesCS3A01G532700.1	Wheat	cytosol	28.47	27.06
TraesCS1A01G034300.2	Wheat	cytosol	27.56	26.83

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF12796	PFAM:PF13857	ScanProsite:PS00518
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF18	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4A01G429100	EnsemblPlants:TraesCS4A01G429100.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	TIGR:cd00204	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:699975857..699981735

Molecular Weight (calculated)

45114.9 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.085

Length

439 amino acids

Sequence
(BLAST)

001: MGNALGCAGL GERLAAAARD GDAAEVRRLL AADPGLARCT ATFGNLSSPL HLAATKGHHE IAALLLEKGA DANARNVYGQ TPLMQACRSG HWEVVQTLLA
101: FRCNVWKADG LTGRTALHAA AAGGHVRCAR LLLADAAGAG EGAAARYANR AAGGGVTALH LAALHGHVDC VHLLVDERAS LDAQTLPCAA APMAAIGAGS
201: TPLHYAASGG EVRCCQVLVS RGADRMAANC NGWLAVDVAR MWKCHWLEHV LAPKSQLPVP KFPPSAYLSL PLPSLLAVAR DYAAAPESFA AAVAGNDDDA
301: CSVCLERPCN VAAEVCGHEL CLKCAMDLCT VMKAYEVPGL AGTVPCPLCR SGIASFRKAV AAATAPPEDD HQSMSGGSLP CACARCQDRH GSPGEEEEEK
401: STCRSSGRRS YGGGGLDDPE AAIAPLYCAP FTGPSAILS

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.