Factsheet for TraesCS6A01G352300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G335000.2	Wheat	cytosol	98.2	98.2
TraesCS6B01G385200.1	Wheat	cytosol	98.2	98.0
EES05937	Sorghum	nucleus	87.8	88.33
Os02t0791200-01	Rice	mitochondrion	85.4	80.41
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	87.8	79.1
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	66.8	66.01
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	67.0	65.82
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	66.2	64.4
KRH18952	Soybean	cytosol, nucleus, plastid	64.4	63.39
KRH02947	Soybean	cytosol, nucleus, plastid	62.8	61.57
TraesCS7A01G145900.1	Wheat	cytosol	57.8	60.08
CDY02760	Canola	cytosol	60.0	59.29
Bra020414.1-P	Field mustard	plastid	59.8	59.21
CDY51284	Canola	cytosol	59.6	59.13
AT5G57740.1	Thale cress	cytosol	59.8	58.86
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.6	57.86
CDY25888	Canola	extracellular, vacuole	48.4	52.49
VIT_18s0001g14720.t01	Wine grape	cytosol	9.2	51.11
TraesCS1A01G189100.1	Wheat	cytosol	48.2	46.35
TraesCS7A01G060700.1	Wheat	cytosol	36.2	41.04
TraesCS4A01G429100.1	Wheat	cytosol	35.6	40.55
CDY65199	Canola	cytosol, mitochondrion, nucleus	16.8	39.07
Bra020415.1-P	Field mustard	mitochondrion	15.6	36.79
TraesCS4A01G097000.2	Wheat	cytosol	26.2	28.85
TraesCS3A01G532700.1	Wheat	cytosol	26.6	28.79
TraesCS1A01G034300.2	Wheat	cytosol	25.8	28.6

Protein Annotations

Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PRINTS:PR01415	ScanProsite:PS00518
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6A01G352300	EnsemblPlants:TraesCS6A01G352300.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	TIGR:cd00204	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:584943628..584946540

Molecular Weight (calculated)

53324.7 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.012

Length

500 amino acids

Sequence
(BLAST)

001: MGFLSLVGNS FGCSASGERL VSAARDGDLQ EARALLEYNP RLARYSTFGG RNSPLHYAAA QGHHEIVSLL LESGVEINLR NYRGQTALMQ ACQYGHWEVV
101: QTLMLFNANI HRTDYLNGGT AIHFAALHGH ARCLRLVLAD YVPSIPNFLN QTNHRSSEEV SDADFDDDGL VKMVNWKADG GLTPLHMAAL NGHVECVQLL
201: LDLGASVSEV TIEDGTTIDL IGSGSTPLHY AACGGNAVCC QLLIARGANL AAKDASGSTP LMVAQSWHRN SIEEILSNEP GGQIRTLPSP YLCLPLMSIM
301: NIARECGWRY LNKSPVCIDP CAVCLDGSCS VAAEGCKHEF CTRCALYLCS TSYTSANPAG AIPCPLCRHP ITSFAVLPGT SPIREQLPRN SLSLSFCATC
401: PAVSSDSAAP GGGHPYRASS ELHCGGGMRM PPMGSSSFRS LSCQAMKLNP SFCMGAMDTN PCLIRCSRFG SSLGRSASHG ETNRRGAWPV TFSPIVATSS

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.