Factsheet for TraesCS1A01G189100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G187300.1	Wheat	cytosol	99.42	99.42
TraesCS1B01G196800.1	Wheat	cytosol	99.23	99.23
HORVU1Hr1G048560.1	Barley	cytosol	98.46	98.46
Os10t0521600-01	Rice	cytosol	42.5	91.32
EER92045	Sorghum	cytosol, nucleus, plastid	89.23	89.23
Zm00001d029663_P001	Maize	cytosol	87.5	87.5
GSMUA_Achr11P...	Banana	plastid	36.35	70.79
GSMUA_Achr11P...	Banana	cytosol	66.73	67.38
VIT_16s0100g00690.t01	Wine grape	nucleus	65.58	66.6
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	64.23	65.36
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	64.23	65.36
KRH09105	Soybean	nucleus	63.65	64.77
KRH38558	Soybean	nucleus	63.46	64.58
KRH35355	Soybean	nucleus	63.08	64.06
KRG91461	Soybean	cytosol, nucleus, plastid	62.5	63.48
CDX98991	Canola	cytosol	62.31	63.03
CDX70022	Canola	cytosol	62.12	62.72
Bra009278.1-P	Field mustard	cytosol	62.12	62.72
AT5G07270.1	Thale cress	cytosol	61.73	62.57
CDY66355	Canola	cytosol	61.35	62.18
GSMUA_Achr11P...	Banana	mitochondrion	32.69	58.62
TraesCS7A01G060700.1	Wheat	cytosol	43.46	51.25
TraesCS4A01G429100.1	Wheat	cytosol	43.08	51.03
TraesCS6A01G352300.1	Wheat	cytosol	46.35	48.2
TraesCS7A01G145900.1	Wheat	cytosol	42.5	45.95
CDY27425	Canola	cytosol	7.31	45.24
TraesCS3A01G532700.1	Wheat	cytosol	27.5	30.95
TraesCS4A01G097000.2	Wheat	cytosol	26.35	30.18
TraesCS1A01G034300.2	Wheat	cytosol	25.0	28.82

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023	PFAM:PF13637	ScanProsite:PS00518	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF35	SMART:SM00184	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1A01G189100	EnsemblPlants:TraesCS1A01G189100.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	TIGR:cd00204	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:+:342387353..342391664

Molecular Weight (calculated)

55340.0 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.019

Length

520 amino acids

Sequence
(BLAST)

001: MGNSLGCSAS GERLVSAARD GDAVEARMLL ELSPALARYS TFGGLNSPLH FAAAKGHLDI VTLLLEKGAD VNARNYCGQT ALMHACRHGH WEVVQMLLLF
101: RCNVTRADYL SGRTALHFAA HDGLVRCVRL LLADFIPSGP LEDTASSVAD GGDSQTNSGS SPTSSLGLKF NEPARVRYIN KPADGGVTAL HMAALNGHFD
201: CMQLLIELGA NVSAVTFPYG TTSNLIGAGS TPLHYAAGGG SLECCQVLLS KGASRLTLNC NGWLPMDVAR IFGRRCLEPL LSPNSHTVIP AIQPSSYLAL
301: PLMSILNIAR EFGLQHTVSS VDESDLCAVC LERSCSVAAE GCGHEFCIKC ALYLCSTSNV RVEFTGPAGS IPCPLCRNGI MSFTKLRSTP TEGLKSSSAL
401: TFCNPCILNT RSVDSPATVC KAEIRRNRVA ALSSELVCPL TCSPFPSSAL PTCRCSDDDP CGSTETLDGS EVQSPRPSHS TSTELDKRGE QDVDRTTCSG
501: MFWSRRSCQR EQQCNAEINA

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.