Factsheet for TraesCS1A01G034300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G28840.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT2G28840.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT2G28840.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G035300.1	Wheat	cytosol	97.12	97.33
TraesCS1B01G050200.3	Wheat	cytosol	97.12	90.12
Os05t0112000-01	Rice	cytosol	86.7	86.89
EES18892	Sorghum	nucleus	84.04	81.51
Zm00001d035657_P001	Maize	cytosol	59.2	78.53
HORVU1Hr1G005260.1	Barley	plastid	84.04	75.5
Zm00001d011060_P001	Maize	cytosol	74.5	75.34
TraesCS3A01G532700.1	Wheat	cytosol	70.29	68.61
GSMUA_Achr7P18180_001	Banana	cytosol	66.74	68.25
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	66.52	68.18
GSMUA_Achr10P...	Banana	nucleus	65.85	67.81
VIT_06s0004g04550.t01	Wine grape	nucleus	60.53	67.57
TraesCS4A01G097000.2	Wheat	cytosol	65.41	64.98
PGSC0003DMT400001171	Potato	nucleus	63.86	64.57
Solyc11g066020.1.1	Tomato	nucleus	63.41	64.13
KRH29806	Soybean	nucleus	62.08	62.64
PGSC0003DMT400077953	Potato	nucleus	61.42	62.53
KRH10274	Soybean	nucleus	61.42	62.39
Solyc06g076050.2.1	Tomato	nucleus	61.64	62.19
KRH23057	Soybean	nucleus	62.08	62.08
KRH24806	Soybean	nucleus	61.42	61.97
CDY47891	Canola	cytosol	62.08	61.54
KRH46816	Soybean	cytosol	59.65	61.42
CDY15789	Canola	cytosol	62.08	61.4
AT2G28840.1	Thale cress	cytosol	62.08	61.4
Bra011923.1-P	Field mustard	nucleus	62.08	61.27
VIT_08s0007g00200.t01	Wine grape	nucleus	60.31	61.26
KRG99867	Soybean	nucleus	59.87	61.22
Bra035664.1-P	Field mustard	nucleus	60.53	60.53
CDX77214	Canola	cytosol	60.09	59.82
CDX83303	Canola	cytosol	59.65	59.12
GSMUA_Achr6P33430_001	Banana	nucleus	63.19	57.81
CDX95759	Canola	cytosol	59.65	57.73
Solyc09g010690.2.1	Tomato	nucleus	57.43	57.43
CDY31737	Canola	cytosol	60.09	56.81
Bra000480.1-P	Field mustard	plastid	58.09	53.14
KRH46162	Soybean	cytosol	38.36	50.0
PGSC0003DMT400023028	Potato	nucleus	57.21	49.71
TraesCS7A01G060700.1	Wheat	cytosol	27.72	28.34
TraesCS4A01G429100.1	Wheat	cytosol	26.83	27.56
TraesCS6A01G352300.1	Wheat	cytosol	28.6	25.8
TraesCS7A01G145900.1	Wheat	cytosol	27.05	25.36
TraesCS1A01G189100.1	Wheat	cytosol	28.82	25.0

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042742	GO:GO:0051865	InterPro:IPR001841
InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13606
PFAM:PF13637	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1A01G034300	EnsemblPlants:TraesCS1A01G034300.2	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	TIGR:cd00204	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:-:16932156..16934328

Molecular Weight (calculated)

48319.5 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.170

Length

451 amino acids

Sequence
(BLAST)

001: MGHGVSCART GDEHDFFRAA QLGDLDALGA LLAADASLAR RATLYDRLSP LHIAAANGRL EALSMFLDRG AQLDAVDRHK QTPLMLAAMH GKIGCVVKLL
101: QAGANILMFD SVHARTCLHH AAYYGHVDCL DAILSTARTT PVAGSWGFAR FVNVRDDHGA TPLHLAARQG RPGCVQVLLE NGAIVSALTG SYGFLGSTSL
201: HLAARSGDLD CIRKLLAWGA DRLQRDSAGR IPYVVAQKRN HGACAALLNP SSAEPMVWPS PLKFISELDP EAKALLEAAL TEANREREKK ILKDAKCSPQ
301: SPLQYDDDHI DDDMFSEVSD TELCCICFDQ ACTIEVQDCG HQMCAPCTLA LCCHNKPNPA TLTLPSPACP FCRGSISRLV VAQTRTADGG DPDRPASPQL
401: AHRRSRRSHN LSEGSSSFKG LSSAISKIAR GSSRMVESGD SAAVDKPEHD P

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.