Factsheet for VIT_08s0007g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04550.t01	Wine grape	nucleus	67.79	74.5
KRG99867	Soybean	nucleus	69.59	70.07
KRH46816	Soybean	cytosol	67.34	68.26
GSMUA_Achr7P18180_001	Banana	cytosol	67.79	68.25
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	66.67	67.27
GSMUA_Achr10P...	Banana	nucleus	66.22	67.12
Os05t0112000-01	Rice	cytosol	64.41	63.56
Solyc09g010690.2.1	Tomato	nucleus	64.19	63.19
TraesCS1D01G035300.1	Wheat	cytosol	61.49	60.67
TraesCS1A01G034300.2	Wheat	cytosol	61.26	60.31
TraesCS4B01G207400.1	Wheat	cytosol	60.59	60.18
EES18892	Sorghum	nucleus	62.84	60.0
TraesCS4D01G208300.1	Wheat	cytosol	60.36	59.29
EER92481	Sorghum	nucleus	59.68	59.15
Os03t0275300-01	Rice	nucleus	61.49	58.71
TraesCS4A01G097000.2	Wheat	cytosol	59.68	58.37
GSMUA_Achr6P33430_001	Banana	nucleus	64.19	57.81
TraesCS3A01G532700.1	Wheat	cytosol	59.23	56.93
TraesCS3D01G537900.1	Wheat	cytosol	58.33	56.55
TraesCS3B01G609500.1	Wheat	cytosol	59.01	56.47
TraesCS1B01G050200.3	Wheat	cytosol	61.49	56.17
PGSC0003DMT400023028	Potato	nucleus	63.96	54.72
Os01t0974400-01	Rice	cytosol	54.73	54.48
EES02150	Sorghum	cytosol	57.43	52.69
KRH46162	Soybean	cytosol	39.64	50.87
Zm00001d025843_P001	Maize	plastid	22.52	48.54
TraesCS7D01G304700.1	Wheat	cytosol	21.85	47.55
HORVU1Hr1G043970.3	Barley	plastid	24.55	38.52
VIT_16s0100g00690.t01	Wine grape	nucleus	29.73	25.78
VIT_18s0001g14720.t01	Wine grape	cytosol	4.95	24.44
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	27.93	24.36

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100249322	wikigene:100249322	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EMBL:AM456837
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN65557	ProteinID:CAN65557.1	ProteinID:CBI30567
ProteinID:CBI30567.3	ncoils:Coil	UniProt:D7THQ1	EMBL:FN595991	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EntrezGene:LOC100249322	wikigene:LOC100249322	PFAM:PF00023	PFAM:PF12796	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850
TIGR:TC55816	UniParc:UPI00015C9EAE	ArrayExpress:VIT_08s0007g00200	EnsemblPlantsGene:VIT_08s0007g00200	EnsemblPlants:VIT_08s0007g00200.t01	unigene:Vvi.1171
RefSeq:XP_002264434	RefSeq:XP_002264434.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:14570401..14573988

Molecular Weight (calculated)

47839.5 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.139

Length

444 amino acids

Sequence
(BLAST)

001: MGQGLSCGEG ADYRFLGAVE DGDVDLVEAM LEEEPSLLEQ RGGNGRLPAL HLAAAKGRIE VLSLILARSV NPDVLNGQKQ TPLMLAAMHG KIYCVQKLLE
101: AGANILMFDS RHGRTCLHYA AYYGHSDCLQ AILSAAHSTP IAVSWGFSRF VNIRDGKGAT PLHLAARQRR SDCVHILLSR GALVCASTSG YCYPGSTPLH
201: LAARGGSLDT VRELLAWGAD RLHRDSSGRI PYTVAMKHKH GACAALLNPS AAGPLVWPSP LKFISTLNPE AKALLERALI EANKEREKAI LKGTIYYLPS
301: PLHSDGGLDD DASEASEAEL CCICFDQVCT IEVQECGHQM CAHCTLALCC HNKPNPTTAC HTVPVCCPFC RSVITRLVVA QIKTNDDTEL EISPTKPRKS
401: REGRNFSEGS SSFKSLSAMG SFGKMGGRNP RKVATECSEE VDKP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.