Factsheet for VIT_16s0100g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	86.13	86.3
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	85.35	85.52
KRG91461	Soybean	cytosol, nucleus, plastid	84.38	84.38
KRH38558	Soybean	nucleus	84.18	84.34
KRH35355	Soybean	nucleus	84.18	84.18
KRH09105	Soybean	nucleus	83.4	83.56
GSMUA_Achr11P...	Banana	plastid	41.02	78.65
AT5G07270.1	Thale cress	cytosol	76.76	76.61
Bra009278.1-P	Field mustard	cytosol	76.76	76.31
Os10t0521600-01	Rice	cytosol	33.2	70.25
GSMUA_Achr11P...	Banana	cytosol	70.51	70.1
TraesCS1D01G187300.1	Wheat	cytosol	66.99	65.96
TraesCS1B01G196800.1	Wheat	cytosol	66.8	65.77
TraesCS1A01G189100.1	Wheat	cytosol	66.6	65.58
VIT_18s0001g14720.t01	Wine grape	cytosol	11.52	65.56
HORVU1Hr1G048560.1	Barley	cytosol	66.41	65.38
EER92045	Sorghum	cytosol, nucleus, plastid	66.41	65.38
Zm00001d029663_P001	Maize	cytosol	65.43	64.42
GSMUA_Achr11P...	Banana	mitochondrion	34.96	61.72
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	51.37	51.67
CDY27425	Canola	cytosol	7.42	45.24
VIT_06s0004g04550.t01	Wine grape	nucleus	26.95	34.16
VIT_08s0007g00200.t01	Wine grape	nucleus	25.78	29.73

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100252095	wikigene:100252095	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI31819	ProteinID:CBI31819.3	UniProt:D7TMU6	EMBL:FN596000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100252095
wikigene:LOC100252095	PFAM:PF00023	PFAM:PF12796	PFAM:PF13857	ScanProsite:PS00518	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF35	SMART:SM00184	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0001985079	ArrayExpress:VIT_16s0100g00690	EnsemblPlantsGene:VIT_16s0100g00690	EnsemblPlants:VIT_16s0100g00690.t01
unigene:Vvi.22080	RefSeq:XP_002278915	RefSeq:XP_002278915.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS

Description

No Description!

Coordinates

chr16:+:16163513..16171868

Molecular Weight (calculated)

55099.0 Da

IEP (calculated)

6.773

GRAVY (calculated)

-0.052

Length

512 amino acids

Sequence
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDLVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VALLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL SGRTALHFAA VNGHVRCIRL VVADFVPSAP HEAINVQNNG DRGDGSNLKN KYDQSALAKF VNKAADGGIT ALHMAALNGY FDCVQLLLDI
201: HANVSAVTFH YGTSMDLIGA GSTPLHYAAC GGNLKCCQIL LARGASRLTL NCNGWLPLDV ARMWGRHWLE PLLAPNSDSI IPVFPPSNCL SLPLMSVLNI
301: ARECGLQSST TSSDETDICA VCLERACTVA AEGCGHELCV RCALYLCSTS NIPSEMVGPP GSIPCPLCRH GITSFVKLPG SPAKEIKLHL SLGLCTPCML
401: HPRESDRPSP ACTPEIRKNR VASVSSDILC PVSCSPFPSV TIPLCTCDDG PCPSFEPREV ETQDESPRRS QTTSIDQDKM EGARLERTSC SSMFWGRRSC
501: SREHQCNSEI NA

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.