Factsheet for PGSC0003DMT400037056

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g026060.2.1	Tomato	cytosol, nucleus, plastid	98.04	98.04
VIT_16s0100g00690.t01	Wine grape	nucleus	86.3	86.13
KRH09105	Soybean	nucleus	81.02	81.02
KRH38558	Soybean	nucleus	80.82	80.82
KRH35355	Soybean	nucleus	80.63	80.47
KRG91461	Soybean	cytosol, nucleus, plastid	80.23	80.08
GSMUA_Achr11P...	Banana	plastid	40.12	76.78
CDX98991	Canola	cytosol	75.54	75.1
Bra009278.1-P	Field mustard	cytosol	75.54	74.95
CDX70022	Canola	cytosol	75.54	74.95
AT5G07270.1	Thale cress	cytosol	74.95	74.66
CDY66355	Canola	cytosol	74.17	73.88
Os10t0521600-01	Rice	cytosol	32.88	69.42
GSMUA_Achr11P...	Banana	cytosol	68.69	68.16
TraesCS1D01G187300.1	Wheat	cytosol	65.75	64.62
TraesCS1B01G196800.1	Wheat	cytosol	65.56	64.42
HORVU1Hr1G048560.1	Barley	cytosol	65.36	64.23
TraesCS1A01G189100.1	Wheat	cytosol	65.36	64.23
EER92045	Sorghum	cytosol, nucleus, plastid	65.17	64.04
Zm00001d029663_P001	Maize	cytosol	64.77	63.65
GSMUA_Achr11P...	Banana	mitochondrion	33.07	58.28
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	51.08	51.58
PGSC0003DMT400001171	Potato	nucleus	26.22	30.04
PGSC0003DMT400077953	Potato	nucleus	25.24	29.12
PGSC0003DMT400023028	Potato	nucleus	24.66	24.28

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102579551	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
UniProt:M1B4R2	PFAM:PF00023	PFAM:PF13637	PFAM:PF13857	EnsemblPlantsGene:PGSC0003DMG400014280	PGSC:PGSC0003DMG400014280
EnsemblPlants:PGSC0003DMT400037056	PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297
PANTHER:PTHR24128	PANTHER:PTHR24128:SF35	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002954B67
RefSeq:XP_006353341.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014280]

Coordinates

chr3:+:42478933..42486295

Molecular Weight (calculated)

55042.4 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.126

Length

511 amino acids

Sequence
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDYVEAKMLL DCNPCLSKYS TFGGLNSPLH FAAAKGHNEI VALLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL SGRTALHFAA VNGHVRCIRL VVTDFVPSAP FESINAQTNA DRGDSSNSKS KHEQSALSKF VNKAADGGIT ALHMAALNGY FDCVQLLLDL
201: NANVSAVTFH YGSSMDLIGA GSTPLHYAAC GGNLKCCQIL IARGANRLTL NCNGWVPLDV ARMWGRHWLE PLLAPNSDSI IPPFPSSSYL SLPLLSVLNI
301: ARECGLQSSG TSSDDSDTCA VCLERDCSVA AEGCGHQLCV RCALYLCSAS NIPSELLGPP GSIPCPLCRH GIVSFVKLPG SPAKEIKLHL SLSLCTPCML
401: HPRDQERSTP PSAHEIRKNR VASVSSDLFC PVTCSPFPSV AMPLCTCDDG PSPTLESREN DTQEETPNQS QSTSTDHDKM NVRLEKTTCS NMFWGRRSCS
501: REHQCNAEIN A

Best Arabidopsis Sequence Match ( AT5G07270.1 )
(BLAST)

001: MGNSFGCSAS GERLVSAARD GDFVEAKMLL DCNPCLAKYS TFGGLNSPLH FAAAKGHNEI VGLLLENGAD VNSRNYCGQT ALMQACRYGH WEVVQTLLLF
101: RCNVTRADYL AGRTALHFAA VNGHARCIRL VLADFLPSDK LNSLPETGVV TAKNKSEQSA LSKFVNKAAD GGITALHMAA LNGLFDCVQL LLDLEANVSA
201: VTFHYGTSMD MIGAGSTPLH YAACGGNLKC CQILLARGAR KMTLNCNGWL PIDIARMWSR HWLEPLLSPN SDVVIPAFPH SNYLSLPLLS ILNIAREFGL
301: QSATIGDEVD ICAVCLERTC TVAAEGCEHQ LCVRCALYLC SSSNVPSVTV GPPGSIPCPL CRHGITAFKR LPSSLTREMK LPMSLGFCAP CMLHTGDTTD
401: QSSPTCPPTE QRSSKTRAAS VSSDIFCPVT CSPFPSVNIP MCTCNEGTCP NFETHGTERH SEEHVESSPS RTTTEQEKIE EGQRLGKTTT CSSMFWGRRS
501: CSRENQCNSE INA

Arabidopsis Description

XBAT33XBAT33 [Source:UniProtKB/TrEMBL;Acc:A0A178U6J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.