Factsheet for PGSC0003DMT400029191

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	97.43	95.91
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	78.06	77.6
KRH18952	Soybean	cytosol, nucleus, plastid	73.32	73.03
KRH02947	Soybean	cytosol, nucleus, plastid	72.13	71.57
GSMUA_Achr4P02080_001	Banana	nucleus	70.75	71.31
GSMUA_Achr3P04900_001	Banana	nucleus	66.4	70.15
EES05937	Sorghum	nucleus	66.8	68.01
TraesCS6D01G335000.2	Wheat	cytosol	66.21	67.0
GSMUA_Achr1P10240_001	Banana	nucleus	58.7	66.89
TraesCS6A01G352300.1	Wheat	cytosol	66.01	66.8
CDY02760	Canola	cytosol	66.8	66.8
Bra020414.1-P	Field mustard	plastid	66.6	66.73
TraesCS6B01G385200.1	Wheat	cytosol	66.01	66.67
AT5G57740.1	Thale cress	cytosol	66.21	65.94
CDY51284	Canola	cytosol	65.22	65.48
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	65.02	63.88
HORVU7Hr1G029900.6	Barley	cytosol	59.68	63.45
Os02t0791200-01	Rice	mitochondrion	66.21	63.09
TraesCS7B01G048300.1	Wheat	cytosol	59.49	62.58
TraesCS7A01G145900.1	Wheat	cytosol	59.29	62.37
TraesCS7D01G147400.1	Wheat	cytosol	59.29	62.37
OQU80200	Sorghum	nucleus	59.09	61.9
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	66.6	60.72
Os08t0258200-02	Rice	nucleus	58.89	60.2
CDY25888	Canola	extracellular, vacuole	53.75	59.0
Zm00001d050184_P010	Maize	plasma membrane	59.49	57.33
PGSC0003DMT400037056	Potato	cytosol, nucleus, plastid	51.58	51.08
CDY65199	Canola	cytosol, mitochondrion, nucleus	18.97	44.65
Bra020415.1-P	Field mustard	mitochondrion	17.79	42.45
PGSC0003DMT400001171	Potato	nucleus	26.28	29.82
PGSC0003DMT400077953	Potato	nucleus	25.3	28.89
PGSC0003DMT400023028	Potato	nucleus	23.52	22.93

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102587672	MapMan:19.2.2.1.5.3.2	ProteinID:ABS72112	ProteinID:ABS72112.1	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EMBL:EF646263	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009791	GO:GO:0009987	GO:GO:0010311	GO:GO:0010366	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0051865	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M1ASD7	PFAM:PF00023	PFAM:PF13637	EnsemblPlantsGene:PGSC0003DMG400011225	PGSC:PGSC0003DMG400011225	EnsemblPlants:PGSC0003DMT400029191
PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF22	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0002948D2E	RefSeq:XP_006343560.1
InterPro:Znf_RING	InterPro:Znf_RING_CS	:	:	:	:

Description

Ankyrin repeat-rich protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011225]

Coordinates

chr7:-:1717351..1723862

Molecular Weight (calculated)

55130.3 Da

IEP (calculated)

7.604

GRAVY (calculated)

-0.034

Length

506 amino acids

Sequence
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDIQ EAKALLDYNP RLVRYSTFGV RNSPLHYSAA QGHHEIVSLL LESGVDINLR NYRGQTALMQ ACQYGHWEVV
101: QILILFMANI HKADYLNGGT ALHLAALNGH SRCIRLLLAD YIPSIPNFCN VMRKRSRNED SIQEFDDFAL HEVINRPADG GITALHMAAL NGHVESLQLL
201: LDLGASVTKV TVEDGTTIDL IGAGSTPLHY AACGGNAQCC QLLIARGASL NAENVNGWTS LMVARSWHRD GLEEILSTRP EKQPRPLPSP FLCLPLMSIV
301: KIARECGWRT IDSPSSTCLD PCVVCLERKC TVAAEGCFHE FCTRCALYLC STSSTSTAAH GPPGSIPCPL CRHGIVSFVK LADTMPIIKE AARTSLSLPF
401: CSCTADGQEP TSLETPLCKP DLYCSRLSPL GSSFRSLSCQ KFPALKFSPG LCMGTPDTSP SLVPRTGERE HLTRCSRPIF RRSTSNVEAR RWLCSFSQSV
501: ETGSSF

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.