CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050184_P010	Maize	plasma membrane	96.07	88.38
HORVU7Hr1G029900.6	Barley	cytosol	85.51	86.76
TraesCS7D01G147400.1	Wheat	cytosol	85.3	85.65
TraesCS7A01G145900.1	Wheat	cytosol	84.89	85.24
TraesCS7B01G048300.1	Wheat	cytosol	84.68	85.03
Os08t0258200-02	Rice	nucleus	85.92	83.84
GSMUA_Achr1P10240_001	Banana	nucleus	57.14	62.16
EES05937	Sorghum	nucleus	61.28	59.56
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	61.9	59.09
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	61.49	58.35
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	61.28	57.59
KRH18952	Soybean	cytosol, nucleus, plastid	59.83	56.89
KRH02947	Soybean	cytosol, nucleus, plastid	59.21	56.08
CDY51284	Canola	cytosol	54.87	52.58
CDY02760	Canola	cytosol	54.87	52.37
Bra020414.1-P	Field mustard	plastid	54.24	51.88
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.87	51.46
AT5G57740.1	Thale cress	cytosol	54.04	51.38
VIT_18s0001g14720.t01	Wine grape	cytosol	8.9	47.78
CDY25888	Canola	extracellular, vacuole	44.93	47.07
KXG19180	Sorghum	cytosol	38.3	45.57
EER92045	Sorghum	cytosol, nucleus, plastid	47.62	44.23
CDY65199	Canola	cytosol, mitochondrion, nucleus	15.32	34.42
Bra020415.1-P	Field mustard	mitochondrion	14.29	32.55
EER92481	Sorghum	nucleus	26.29	28.35
EES18892	Sorghum	nucleus	25.88	26.88
EES02150	Sorghum	cytosol	25.47	25.41

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:8073268	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5YJS4	ProteinID:EES14803.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:OQU80200
ProteinID:OQU80200	ProteinID:OQU80200.1	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01415	ScanProsite:PS00518
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184
SMART:SM00248	EnsemblPlantsGene:SORBI_3007G092600	SUPFAM:SSF48403	SUPFAM:SSF57850	unigene:Sbi.19783	UniParc:UPI0001A8781E
RefSeq:XP_002445308.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:15926171..15931562

Molecular Weight (calculated)

51910.9 Da

IEP (calculated)

8.619

GRAVY (calculated)

0.063

Length

483 amino acids

Sequence
(BLAST)

001: MGLLGMMGDS FGCSATGERL VSAARDGDIQ EARALLELNP RLARYSTFGI RNSPLHYSAA KGHHEIVSLL IESGVNINLR NCRGQTALMQ ACLYGHWKVV
101: QILVLFKANI HRRDCFSGAT AIHFAALKGH TRCIRLLVAD YVPSLSEFWT IMRAKSKDQM KKDAFDAVAL QRLVNGKSDG GVTPLHLAAL HGHAESVQLL
201: LDLGASVSEV TVNDGSTIDL IGSGSTPLHY AACGGSAVCC QLLIAAGANM GAQNANGLTP LLVARSWHKT SIEGILSKQP ENRMRILPSP YLCLPLMSIV
301: KIARECGWRK TSASSTCQDP CVICLEVECT VAAEGCGHEF CTKCALYLCS TTSSSTSIRG VPGSISCPLC RHAIVSFMRL TSTTPIKELP WTSASLALCA
401: AGASTGPDHG RSLQRRSDMR RLRSSSVQLG CSSFISIGSG KLSSIKLNCT GAEEAVPCLV SCLRPDVQRS SSYRERIRRY SEF

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.