CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G352300.1	Wheat	cytosol	88.33	87.8
TraesCS6D01G335000.2	Wheat	cytosol	87.93	87.4
TraesCS6B01G385200.1	Wheat	cytosol	87.93	87.23
Os02t0791200-01	Rice	mitochondrion	89.74	83.99
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	92.35	82.7
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	68.01	66.8
VIT_11s0037g01410.t01	Wine grape	cytosol, nucleus, plastid	67.61	66.01
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	67.61	65.37
KRH18952	Soybean	cytosol, nucleus, plastid	65.19	63.78
KRH02947	Soybean	cytosol, nucleus, plastid	64.19	62.55
OQU80200	Sorghum	nucleus	59.56	61.28
CDY51284	Canola	cytosol	61.77	60.91
CDY02760	Canola	cytosol	61.57	60.47
AT5G57740.1	Thale cress	cytosol	61.77	60.43
Bra020414.1-P	Field mustard	plastid	61.17	60.2
Bra002699.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.77	59.61
CDY25888	Canola	extracellular, vacuole	50.5	54.45
VIT_18s0001g14720.t01	Wine grape	cytosol	9.26	51.11
EER92045	Sorghum	cytosol, nucleus, plastid	49.9	47.69
KXG19180	Sorghum	cytosol	38.23	46.8
CDY65199	Canola	cytosol, mitochondrion, nucleus	17.71	40.93
Bra020415.1-P	Field mustard	mitochondrion	16.3	38.21
EER92481	Sorghum	nucleus	25.35	28.12
EES18892	Sorghum	nucleus	25.96	27.74
EES02150	Sorghum	cytosol	25.15	25.83

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	EntrezGene:8082725	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
UniProt:C5XUC8	EnsemblPlants:EES05937	ProteinID:EES05937	ProteinID:EES05937.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00023
PFAM:PF12796	PFAM:PF13637	PRINTS:PR01415	ScanProsite:PS00518	PFscan:PS50088	PFscan:PS50089
PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184	SMART:SM00248	EnsemblPlantsGene:SORBI_3004G326400
SUPFAM:SSF48403	SUPFAM:SSF57850	unigene:Sbi.2229	UniParc:UPI0001A85B13	RefSeq:XP_002452961.1	InterPro:Znf_RING
InterPro:Znf_RING_CS	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:66140091..66144334

Molecular Weight (calculated)

53849.8 Da

IEP (calculated)

7.236

GRAVY (calculated)

0.029

Length

497 amino acids

Sequence
(BLAST)

001: MGFLSLVGNS FGCSASGERL VSAARDGDLQ EARALLEYNP RLARYSTFGG RNSPLHYAAA QGHHEIVSLL LESGVEINLR NYRGQTALMQ ACQYGHWEVV
101: QTLILFNANV HRTDYLNGGT AIHFAALHGH ARCLRLVLAD YVPSIPNFCT VMNHRPSEED SASDFDHDAL VKMVNQKADG GLTPLHMAAL NGHVECVQLL
201: LDLGASVSEV TIEDGTTIDL IGAGSTPLHY AACGGNVVCC QLLIARGACL TVQNASGWTP LMVARSWQRN SVEEILSKEP EGRIRTLPSP YLCLPLMSIM
301: NIARECGWRY LNQSPVCIDP CAVCLEGSCS VAAEGCKHEF CTRCALYLCS TSYTSVSPAG AIPCPLCRHP IISFITLPGT SPIRELPRNS LSLSFCTTCP
401: AVNSDSSSPI AAHLYRTEFQ CGRMPPMMGS SSFRSLSCQR IPAMKLNPAF CMGSMDTNPC LIRCSKFGSS LRRSASQGEE TRRAWPLTFN PIVATSS

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.