CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020414.1-P	Field mustard	plastid	98.81	99.01
AT5G57740.1	Thale cress	cytosol	91.3	90.94
CDY51284	Canola	cytosol	90.12	90.48
CDY65199	Canola	cytosol, mitochondrion, nucleus	37.15	87.44
CDY25888	Canola	extracellular, vacuole	79.05	86.77
PGSC0003DMT400029191	Potato	cytosol, mitochondrion, nucleus, plastid	66.8	66.8
KRH18952	Soybean	cytosol, nucleus, plastid	66.4	66.14
Solyc07g006350.2.1	Tomato	cytosol, nucleus, plastid	66.6	65.56
KRH02947	Soybean	cytosol, nucleus, plastid	65.22	64.71
GSMUA_Achr3P04900_001	Banana	nucleus	60.47	63.88
GSMUA_Achr4P02080_001	Banana	nucleus	62.65	63.15
GSMUA_Achr1P10240_001	Banana	nucleus	54.94	62.61
EES05937	Sorghum	nucleus	60.47	61.57
TraesCS6D01G335000.2	Wheat	cytosol	59.29	60.0
TraesCS6A01G352300.1	Wheat	cytosol	59.29	60.0
TraesCS6B01G385200.1	Wheat	cytosol	59.29	59.88
Os02t0791200-01	Rice	mitochondrion	60.47	57.63
TraesCS7A01G145900.1	Wheat	cytosol	52.77	55.51
HORVU7Hr1G029900.6	Barley	cytosol	52.17	55.46
Zm00001d052057_P013	Maize	cytosol, mitochondrion, nucleus, plasma membrane, plastid	60.67	55.32
TraesCS7D01G147400.1	Wheat	cytosol	52.37	55.09
OQU80200	Sorghum	nucleus	52.37	54.87
TraesCS7B01G048300.1	Wheat	cytosol	51.98	54.68
Os08t0258200-02	Rice	nucleus	52.57	53.74
CDY27425	Canola	cytosol	8.5	51.19
Zm00001d050184_P010	Maize	plasma membrane	52.37	50.48
CDY66355	Canola	cytosol	46.84	46.2
CDX70022	Canola	cytosol	46.64	45.83
CDX98991	Canola	cytosol	46.44	45.72
CDY47891	Canola	cytosol	24.11	26.81
CDY15789	Canola	cytosol	23.91	26.54
CDX77214	Canola	cytosol	23.52	26.27
CDX83303	Canola	cytosol	23.52	26.15
CDX95759	Canola	cytosol	23.52	25.54
CDY31737	Canola	cytosol	23.91	25.37

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078EL69	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY02760	ProteinID:CDY02760	ProteinID:CDY02760.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719
GO:GO:0009733	GO:GO:0009791	GO:GO:0009987	GO:GO:0010311	GO:GO:0010366	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0051865	EnsemblPlantsGene:GSBRNA2T00114925001	InterPro:IPR001841	InterPro:IPR002110
InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PRINTS:PR01415	ScanProsite:PS00518
PFscan:PS50088	PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF22	SMART:SM00184
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0004EE2B49	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaC02g11290D

Coordinates

chrLK031937:-:290703..293531

Molecular Weight (calculated)

54034.4 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.030

Length

506 amino acids

Sequence
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNSKSSVS GFDPSVIQEV INRAADGGIT PLHVAALNGH VETVQLLLDL
201: GASLTQVTVE DGTTIDLIGA GSTPLHYASC GGNTQCCQLL IDKGASLAAI NSNGWTPLMV ARSWHRNCLE EVLNPTTEQP QSQLPKVPSP FLCLPLMSIV
301: KIAQECGWRG DDCLTPCRDP CAVCLERKCT VAADGCGHEF CTNCALYLST TNITSSKTSK ATPGSVPCPL CRYGIVSFTK LPHTIPTTTA TSSRTSISLS
401: FCTCSSSDVL DTGALLTDPH YSCKPVVSRT GSQSVGSSSS FRSLSCRFPP SLCLGGSDVD EPQSRLMNGS YSRSGLGSRR STSEVEGKRS WFCALNHCVT
501: TGGSPC

Best Arabidopsis Sequence Match ( AT5G57740.1 )
(BLAST)

001: MRFLSLVGNS FGCSASGERL VSAARDGDLQ EAKALLDYNP RLARYSTFGV RNSPLHYSAA QGHHEIVSLL VESGVDINLR NYRGQTALMQ ACQHGHWEVV
101: LILILFGANI HRSDYLNGGT ALHLAALNGH PRCIRILLSE YIPSVPNCWS LLKNKKTSVA GFDSSVLHEV INRAADGGIT PLHVAALNGH IETVQLLLDL
201: GASVTQVTVE DGTTIDLIGA GSTALHYASC GGNTQCCQLL ISKGACLAAV NSNGWTPMMV ARSWHRNWLE EILNPTTEQP QLHLPNVPSP FLCLPLMSIV
301: NIAQECGWRE NDCLTPCRDP CAVCLERKCT VAADGCAHEF CTNCALYLST TSITSSKTSN VTPGSVPCPL CRNGIVSFTK LPHTTATTRT STSSRTSISL
401: SFCTCSSDVL DTALLTNPHY SCKPVVSRTG SRTPQSARSS AFRSLSCRRF PPSLCLGGSD VDEPRSRLIG GSYSRSGVGF RRSTSQVEGK RSWFSALNHC
501: VTTGGSAC

Arabidopsis Description

XBAT32XBAT32 [Source:UniProtKB/TrEMBL;Acc:A0A178UH83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.