CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY03088
CDY17621
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	CDY03088	AT2G01950.1	19000166
AT2G28840.1	CDY17621	AT2G01950.1	19000166
AT2G28840.1	CDX76438	AT4G21670.1	18541146
AT2G28840.1	CDX79083	AT4G21670.1	18541146
AT2G28840.1	CDX94046	AT4G21670.1	18541146
AT2G28840.1	CDX98696	AT4G21670.1	18541146
AT2G28840.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77214	Canola	cytosol	91.82	96.69
Bra035664.1-P	Field mustard	nucleus	91.19	96.45
CDX83303	Canola	cytosol	83.23	87.25
CDY47891	Canola	cytosol	82.6	86.59
CDY15789	Canola	cytosol	82.6	86.4
AT2G28840.1	Thale cress	cytosol	80.92	84.65
CDX95759	Canola	cytosol	82.18	84.12
VIT_06s0004g04550.t01	Wine grape	nucleus	60.17	71.04
KRH10274	Soybean	nucleus	63.94	68.69
KRH23057	Soybean	nucleus	64.36	68.07
Solyc11g066020.1.1	Tomato	nucleus	62.26	66.59
KRH29806	Soybean	nucleus	62.26	66.44
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	61.22	66.36
PGSC0003DMT400001171	Potato	nucleus	61.84	66.14
KRH24806	Soybean	nucleus	61.84	66.0
GSMUA_Achr7P18180_001	Banana	cytosol	60.8	65.76
PGSC0003DMT400077953	Potato	nucleus	60.8	65.46
Solyc06g076050.2.1	Tomato	nucleus	60.8	64.88
Os05t0112000-01	Rice	cytosol	60.17	63.78
GSMUA_Achr10P...	Banana	nucleus	56.81	61.87
TraesCS1D01G035300.1	Wheat	cytosol	57.44	60.89
TraesCS1A01G034300.2	Wheat	cytosol	56.81	60.09
EES18892	Sorghum	nucleus	57.23	58.71
TraesCS4B01G207400.1	Wheat	cytosol	54.51	58.17
TraesCS4D01G208300.1	Wheat	cytosol	54.3	57.3
TraesCS4A01G097000.2	Wheat	cytosol	54.3	57.05
EER92481	Sorghum	nucleus	53.04	56.47
TraesCS1B01G050200.3	Wheat	cytosol	57.44	56.38
Os03t0275300-01	Rice	nucleus	53.88	55.27
TraesCS3D01G537900.1	Wheat	cytosol	53.04	55.24
TraesCS3A01G532700.1	Wheat	cytosol	53.25	54.98
GSMUA_Achr6P33430_001	Banana	nucleus	56.81	54.97
TraesCS3B01G609500.1	Wheat	cytosol	53.46	54.96
Os01t0974400-01	Rice	cytosol	50.52	54.04
EES02150	Sorghum	cytosol	51.78	51.03
TraesCS7D01G304700.1	Wheat	cytosol	20.55	48.04
Zm00001d025843_P001	Maize	plastid	19.92	46.12
HORVU1Hr1G043970.3	Barley	plastid	23.27	39.22
CDY27425	Canola	cytosol	5.03	28.57
CDX98991	Canola	cytosol	27.04	25.1
CDX70022	Canola	cytosol	27.04	25.05
CDY66355	Canola	cytosol	26.83	24.95
CDY02760	Canola	cytosol	25.37	23.91
CDY51284	Canola	cytosol	25.16	23.81
CDY25888	Canola	extracellular, vacuole	21.8	22.56
CDY65199	Canola	cytosol, mitochondrion, nucleus	7.76	17.21

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078H2J3	UniProt:A0A078H2J3	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY31737	ProteinID:CDY31737	ProteinID:CDY31737.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00050379001	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13606	PFAM:PF13637	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF14	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF57850	UniParc:UPI0004EDC0DC	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA04g16730DBnaA04g16730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2J3]

Coordinates

chrLK032278:+:190206..193124

Molecular Weight (calculated)

51654.1 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.175

Length

477 amino acids

Sequence
(BLAST)

001: MGQSMSCGAK PEHEIFASVQ RGDIVTVRRA ITADPSVLRQ TTAYDRHSLL HVAAASGHIE ILSLLLERSS NPDMLNRHKQ TPLMLAAMHG RISCLKKLAQ
101: VGANTPLMLA AMHGRISCLK KLAQVGANVL MFDSVNRRTC LHYAAYYGHA DCVQAILSAA RSTPVALHWG YARFVNLRDD KGATPLHLAA RQRSPDCVNA
201: LLDSGSLVCV STSLYGSPGS TPLHLAARSG SIDCVRKLLA WGADRLQRDA SGRIPYVVAM KYKHGACGAL LNPSSAEPLV WPSPLKFINE LNEEAKLLLE
301: QALMDANMER EKTILNGTDY SLPSPPPSFS DTASDDDNMS QMSDSELCCI CFEQVCTIEV KDCGHQMCAQ CTLALCCHNK PNPTTSTVTP PVCPFCRSVI
401: ARLVVAQNNN KDDKSNSQEE VGDVSSSKLR KHRRSINLGE ESSSFMGLSS IGSFGKVTGR GSGRITADNE LMNKPIS

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.