Factsheet for Os03t0275300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0639000-01
Os04t0529500-02
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28840.1	Os10t0114400-01	AT2G01950.1	19000166
AT2G28840.1	Os02t0639000-01	AT4G21670.1	18541146
AT2G28840.1	Os04t0529500-02	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G207400.1	Wheat	cytosol	85.38	88.81
Zm00001d028616_P001	Maize	cytosol	84.3	87.89
TraesCS4D01G208300.1	Wheat	cytosol	85.38	87.83
EER92481	Sorghum	nucleus	84.3	87.5
Zm00001d047806_P001	Maize	cytosol	83.66	87.22
TraesCS4A01G097000.2	Wheat	cytosol	84.95	87.0
HORVU4Hr1G059710.8	Barley	cytosol	84.95	83.16
Zm00001d028254_P001	Maize	plastid	54.19	65.62
Os05t0112000-01	Rice	cytosol	63.01	65.11
VIT_06s0004g04550.t01	Wine grape	nucleus	55.91	64.36
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	60.43	63.86
GSMUA_Achr10P...	Banana	nucleus	59.14	62.79
VIT_08s0007g00200.t01	Wine grape	nucleus	58.71	61.49
GSMUA_Achr7P18180_001	Banana	cytosol	58.06	61.22
KRH29806	Soybean	nucleus	58.49	60.85
KRH10274	Soybean	nucleus	57.42	60.14
KRH24806	Soybean	nucleus	57.63	59.96
KRH23057	Soybean	nucleus	57.85	59.65
KRG99867	Soybean	nucleus	56.34	59.41
KRH46816	Soybean	cytosol	55.91	59.36
CDY47891	Canola	cytosol	57.63	58.9
CDY15789	Canola	cytosol	57.63	58.77
Bra011923.1-P	Field mustard	nucleus	57.63	58.64
PGSC0003DMT400001171	Potato	nucleus	56.13	58.52
AT2G28840.1	Thale cress	cytosol	57.2	58.33
Solyc11g066020.1.1	Tomato	nucleus	55.7	58.07
Os01t0974400-01	Rice	cytosol	55.48	57.85
Bra035664.1-P	Field mustard	nucleus	55.91	57.65
CDX83303	Canola	cytosol	56.34	57.58
PGSC0003DMT400077953	Potato	nucleus	54.62	57.34
Solyc06g076050.2.1	Tomato	nucleus	55.05	57.27
CDX77214	Canola	cytosol	54.62	56.07
Solyc09g010690.2.1	Tomato	nucleus	54.19	55.88
CDX95759	Canola	cytosol	55.91	55.79
GSMUA_Achr6P33430_001	Banana	nucleus	58.49	55.17
CDY31737	Canola	cytosol	55.27	53.88
Bra000480.1-P	Field mustard	plastid	55.05	51.93
KRH46162	Soybean	cytosol	36.99	49.71
PGSC0003DMT400023028	Potato	nucleus	54.19	48.55
Os06t0128700-01	Rice	cytosol	9.68	36.0
Os06t0128600-01	Rice	cytosol, mitochondrion	4.73	33.85
Os10t0521600-01	Rice	cytosol	16.13	30.99
Os08t0258200-02	Rice	nucleus	29.03	27.27
Os02t0791200-01	Rice	mitochondrion	27.74	24.29

Protein Annotations

Gene3D:1.25.40.20	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:4332407	ProteinID:ABF95250.1	EMBL:AK243581
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:BAS83502.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001841	InterPro:IPR002110	InterPro:IPR013083	InterPro:IPR020683	InterPro:IPR036770
EnsemblPlantsGene:Os03g0275300	EnsemblPlants:Os03t0275300-01	PFAM:PF12796	PFAM:PF13857	PRINTS:PR01415	PFscan:PS50088
PFscan:PS50089	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF19	UniProt:Q10NB7	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF57850	UniParc:UPI0000DB4953	RefSeq:XP_015628044.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Hypothetical conserved gene. (Os03t0275300-01)

Coordinates

chr3:-:9296962..9300002

Molecular Weight (calculated)

49167.4 Da

IEP (calculated)

7.750

GRAVY (calculated)

-0.149

Length

465 amino acids

Sequence
(BLAST)

001: MGQGASCGRP SEEVDFFGAA QSGDLARLAA AVRSRPSLLG RTTLFDRLSA LHIAAAHGHL QVVSMALDLC VHPDVVNRHK QTALMLAAMH GRTECVRRLL
101: DAGANIVMFD SSHGRTCLHY AAYYGHADCL RAILSAAQSA PVSQSWGFAR FVNVRDDTGA TPLHLAARQG WRRCVHVLLE NGAIVSASSS AFGFPGSTPL
201: HLAARGGSLD CVRQLLSWGA DRLQRDSVGR IPYEVAMKRG HVACAALLNP SSAEPLVWPS PLKFISELEP DAKALLEAAL MEANREREKR TLKGARSASP
301: LALPSPSRSD DGAHDAAISE EAAAAGGGEV CSICFEQACT IEVRECGHQM CAACTLALCC HAKPSAAAAT PCQQPLPTCP FCRGGISRLV VATTKTRAGG
401: DDEEDDEEAG SRLASPLHRR SRRAVNHPSG DGGSTSSIMG SIASSIGKMG RRRTDSSEHV DVDKP

Best Arabidopsis Sequence Match ( AT2G28840.1 )
(BLAST)

001: MGQSMSCGSR PEHGIFASVQ CGDIITIRRV MATEPSLLNQ TTPYDRHSVL HVAAANGQIE ILSLLLERFT NPDLLNRHKQ TPLMLAAMYG RISCVKKLAE
101: VGANILMFDS VNRRTCLHYA AYYGHANCVQ AILSAAQSSP VAVHWGYARF VNIRDDKGAT PLHLAARQRR PECVNVLLDS GSLVCASTSV YGSPGSTPLH
201: LAARSGSIDC VRKLLAWGAD RLQRDASGRI PYVVAMKHKH GACGALLNPS SAEPLVWPSP LKFISELNDE AKLLLEQALM EANREREKTI LKGTAYSLPS
301: PSFSDTDDNM SEVSDTELCC ICFEQVCTIE VKDCGHQMCA QCTLALCCHN KPNPTTSTVT PPVCPFCRST IACLVVAQNN NNNNEKSKSL DDVVVVDREA
401: GDVSSSKFRK HRRSINLGEE SSSFMGLSTI GSFGRITGRG SGRIAAENEL MDKPIL

Arabidopsis Description

XBAT31Putative E3 ubiquitin-protein ligase XBAT31 [Source:UniProtKB/Swiss-Prot;Acc:Q94B55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.