Factsheet for Os04t0529500-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
YLoc:	nucleus

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0235200-02
Os01t0861700-00
Os01t0974400-01
Os02t0149600-01
Os02t0516600-01
Os03t0275300-01
Os05t0112000-01
Os05t0307400-01
Os06t0698859-01
Os06t0724100-01
Os07t0573300-01
Os08t0517300-01
Os11t0109900-01
Os11t0171500-01
Os12t0109900-02
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	Os05t0307400-01	AT1G09700.1	23141542
AT4G21670.1	Os11t0109900-01	AT1G09700.1	23141542
AT4G21670.1	Os12t0109900-02	AT1G09700.1	23141542
AT4G21670.1	Os06t0724100-01	AT1G20110.1	18541146
AT4G21670.1	Os07t0573300-01	AT1G20110.1	18541146
AT4G21670.1	Os11t0171500-01	AT1G35670.1	19130088
AT4G21670.1	Os12t0169800-00	AT1G35670.1	19130088
AT4G21670.1	Os02t0149600-01	AT2G27100.1	23141542
AT4G21670.1	Os06t0698859-01	AT2G27100.1	23141542
AT4G21670.1	Os08t0517300-01	AT2G27100.1	23141542
AT4G21670.1	Os01t0974400-01	AT2G28840.1	18541146
AT4G21670.1	Os03t0275300-01	AT2G28840.1	18541146
AT4G21670.1	Os05t0112000-01	AT2G28840.1	18541146
AT4G21670.1	Os02t0516600-01	AT3G26730.1	18541146
AT4G21670.1	Os01t0235200-02	AT3G49250.1	18541146
AT4G21670.1	Os01t0861700-00	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26770	Sorghum	nucleus	74.81	74.1
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	69.77	73.06
TraesCS2A01G373400.3	Wheat	nucleus	74.17	73.0
Os02t0639000-01	Rice	cytosol	72.56	72.02
TraesCS2B01G390500.3	Wheat	nucleus	72.99	71.76
TraesCS2D01G369600.4	Wheat	nucleus	72.45	71.31
GSMUA_Achr11P...	Banana	cytosol	2.89	69.23
GSMUA_Achr11P...	Banana	nucleus	57.02	57.39
GSMUA_Achr8P14120_001	Banana	nucleus	58.2	57.22
PGSC0003DMT400057635	Potato	nucleus	51.88	54.94
Solyc02g078550.2.1	Tomato	nucleus	55.52	54.3
GSMUA_Achr11P...	Banana	extracellular	10.4	53.01
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	43.73	51.78
KRH20483	Soybean	nucleus	53.05	51.56
KRH50009	Soybean	nucleus	52.63	51.36
KRH10835	Soybean	nucleus	51.98	50.63
KRH21480	Soybean	nucleus	51.23	49.79
CDY31421	Canola	cytosol	44.48	49.52
Bra020905.1-P	Field mustard	cytosol	44.91	49.47
CDX76438	Canola	cytosol	44.69	49.23
CDX98696	Canola	nucleus	49.09	49.14
AT4G21670.1	Thale cress	nucleus	50.8	49.02
Bra038764.1-P	Field mustard	nucleus	49.52	48.79
CDX94046	Canola	nucleus	49.09	48.16
CDX79083	Canola	nucleus	42.98	46.68
Bra013546.1-P	Field mustard	nucleus	42.34	44.99
Os01t0857000-01	Rice	cytosol, nucleus, plastid	34.51	42.59
VIT_00s0370g00030.t01	Wine grape	nucleus, plastid	7.18	41.88

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	UniProt:A0A0P0WCN4	ProteinID:BAS90195.1	ncoils:Coil
InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058	GO:GO:0009987
GO:GO:0016591	GO:GO:0016787	GO:GO:0019538	GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274
InterPro:IPR014720	EnsemblPlantsGene:Os04g0529500	EnsemblPlants:Os04t0529500-02	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF11	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784
UniParc:UPI00039395A2	InterPro:dsRBD_dom	:	:	:	:

Description

-Similar to C-terminal domain phosphatase-like 1. (Os04t0529500-01);Similar to OSIGBa0155K17.3 protein. (Os04t0529500-02);Similar to cDNA clone:J023022A09, full insert sequence. (Os04t0529500-03)

Coordinates

chr4:+:26484115..26494089

Molecular Weight (calculated)

103727.0 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.471

Length

933 amino acids

Sequence
(BLAST)

001: GSTSIGHVEV WPKGGTDLAV AAWAREIRVD HLSPPSERCP PLAVLHAVAA GGRCLVMESR PTATADEPPP PLVAMHAACL RDGKTAVFPL GAEEIHLVAM
101: TSKRNLPNLA CFWGYKVPSG LYNSCLSMLN LRCLGIVFDL DETLLVANTT RSFEDRIDAL QRKLSNEIDP QHISGMSAEI KRYQEDKSIL KQYIENDQVI
201: DGGKVYKVQT EVIPPLPDNH QPMTRPIIRL QEKNIILTRI NPLIRDTSVL VRLRPAWEDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR LLDPDSRLIN
301: SVQLTDRLVC VKSGSRKSLL NVFHDGSCHP EMALVIDDRL KVWDEKDQCR VHVVPAFSPY YSPQAEANFS VPVLCFARNV ACNVRGGFFK EFDEVLLPRI
401: SEIHYEDEIN DFPSAPDVGN YLITEDENAA ILNVNKDPLA FDGMADAEVE RRLKEVSCSV QAVNPIPTNA DVMPVAPNQQ LITSSVPEAP SLGMIPLNND
501: QGPQPPSSWP VAQSAPVDPS QSSPAREEGE VPESELDPDT RRRLLILQHG QDTRDPAPPC PAGSPVQTSV LPVQSHGNWS HVEDEMNPRS LNRTSTGFHL
601: ESDDINYDKK QPHNPPYFPD EDNLITSDRY NRRIHRYPSQ LPHSEDHHML NRSSIAYRSF PGEDMGNRFG PSNHRSSKIE PGHQFVQNAE TSAGVLEEIA
701: VECGFKVEYQ STLCSTAELQ FSIEVRILGE KVGEGIGKTR KAAKRQAVNM SLRNLAEKFL TSDPDKMMIL KENGFSSNSN SFRYSGGSRD DTSPVASTSN
801: ESRYMGERVD TLRKPAGSVA ALKELCTVEG YNLVFQEQPS RPRGSSGKEA YAQVEIGGQI LGKGVGATWE QAKLQAADEA LGNLKSMLGI FAHKSSGFQR
901: SSVSNFNRFK PDFQRSLQTI PSGWDSRNNG RVL

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.