Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0639000-01 | |
| Os04t0529500-02 | |
| Os05t0307400-01 | |
| Os11t0109900-01 | |
| Os12t0109900-02 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 4.8 | 65.31 |
| TraesCS6A01G119000.1 | Wheat | nucleus | 48.65 | 64.8 |
| HORVU6Hr1G021620.2 | Barley | nucleus | 49.7 | 61.87 |
| Os06t0698859-01 | Rice | nucleus | 54.05 | 49.79 |
| TraesCS6B01G147000.1 | Wheat | nucleus | 54.8 | 48.8 |
| TraesCS6D01G108900.1 | Wheat | nucleus | 53.75 | 47.48 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 40.54 | 46.08 |
| Os08t0517300-01 | Rice | plastid | 43.84 | 45.13 |
| KRH56284 | Soybean | endoplasmic reticulum | 48.05 | 44.82 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 49.25 | 44.63 |
| KRH62750 | Soybean | nucleus | 47.15 | 44.16 |
| Bra034322.1-P | Field mustard | nucleus | 45.2 | 43.5 |
| KRH44717 | Soybean | nucleus | 46.7 | 43.38 |
| CDX77068 | Canola | nucleus | 44.74 | 43.19 |
| AT2G27100.1 | Thale cress | nucleus | 46.55 | 43.06 |
| KXG29470 | Sorghum | nucleus, plastid | 52.4 | 42.98 |
| CDY04478 | Canola | nucleus | 45.35 | 42.54 |
| CDX71472 | Canola | nucleus | 44.89 | 42.53 |
| Bra012034.1-P | Field mustard | nucleus | 45.05 | 42.25 |
| Solyc01g009090.2.1 | Tomato | nucleus | 47.15 | 41.98 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 10.06 | 34.72 |
| Os06t0698900-01 | Rice | nucleus | 7.81 | 17.81 |
Protein Annotations
| MapMan:15.5.15 | MapMan:16.10.2.1.3 | EntrezGene:4328304 | InterPro:Arsenite-R_2 | ProteinID:BAD13072.1 | ProteinID:BAF07810.1 |
| ProteinID:BAS76992.1 | InterPro:DUF3546 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| EnsemblPlantsGene:Os02g0149600 | EnsemblPlants:Os02t0149600-01 | PFAM:PF04959 | PFAM:PF12066 | ScanProsite:PS00028 | PANTHER:PTHR13165 |
| PANTHER:PTHR13165:SF2 | UniProt:Q6Z422 | UniParc:UPI0000350418 | RefSeq:XP_015623289.1 | InterPro:Znf_C2H2_type | SEG:seg |
Description
Zinc finger, C2H2-like domain containing protein. (Os02t0149600-01)
Coordinates
chr2:+:2728878..2734454
Molecular Weight (calculated)
73797.1 Da
IEP (calculated)
8.426
GRAVY (calculated)
-0.852
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVLLPELR SPPPPPPPPP PTNDDRARAV DLPSPTPECD DRSPRRELGR SPEDHGVPLP PPPPLGSSRP ERLASDRPEE GASAAAQPCG GRSESPTARS
101: MWPRRLSPAS LPPRGGRRSE SPTPRSIWRR LSPSPPPPLP PLPPKRPRLD GRRSPPRGGR FGFEHERGRE RSMNTSRRAP DCLDSGCDAP YNGQSNTRRK
201: GLMTYKQFTQ KLEDDVSPGE AESRYQEYKT SYITSQKQDY FDHHKNEDRL KDMYHPTNLL SVIERRNELC KAAAKNLILD LRSGTLDLGP GMTAGTASKS
301: GNDSDGIPAD DEDYHNKRRR HHRGPLEETE LVSVAPKAHP VSSHYRRIQT DIHQTLALVK KLDEEKGIVG NILTTGDHTK SNGDKSYAGS TGPLVIVRGL
401: STVKGLDGFE LLDTLLTYLW HVHGIDYYGM SESTNAKGLR HVRADTKNAN MDKSSAADWE KKLDYFWQER LTNGKDPLVA LTAKDKIDAS ADKVLESYVT
501: KVKDDNYGWT YGCGAKGCIK VFHAPDFVLK HLNLKHPDLV SKLTSRVQED IYFQNYMNDP NAPGGTPVMQ QQSPEQQGPT PSELTPGAFG GQGSFVEMPT
601: PPVLIPVPGA GPLGPFVPAP PEVVMQMMRP VMPMYPPRPP NPRRLRSYKD LDAPDDEVTL VDYRSL
101: MWPRRLSPAS LPPRGGRRSE SPTPRSIWRR LSPSPPPPLP PLPPKRPRLD GRRSPPRGGR FGFEHERGRE RSMNTSRRAP DCLDSGCDAP YNGQSNTRRK
201: GLMTYKQFTQ KLEDDVSPGE AESRYQEYKT SYITSQKQDY FDHHKNEDRL KDMYHPTNLL SVIERRNELC KAAAKNLILD LRSGTLDLGP GMTAGTASKS
301: GNDSDGIPAD DEDYHNKRRR HHRGPLEETE LVSVAPKAHP VSSHYRRIQT DIHQTLALVK KLDEEKGIVG NILTTGDHTK SNGDKSYAGS TGPLVIVRGL
401: STVKGLDGFE LLDTLLTYLW HVHGIDYYGM SESTNAKGLR HVRADTKNAN MDKSSAADWE KKLDYFWQER LTNGKDPLVA LTAKDKIDAS ADKVLESYVT
501: KVKDDNYGWT YGCGAKGCIK VFHAPDFVLK HLNLKHPDLV SKLTSRVQED IYFQNYMNDP NAPGGTPVMQ QQSPEQQGPT PSELTPGAFG GQGSFVEMPT
601: PPVLIPVPGA GPLGPFVPAP PEVVMQMMRP VMPMYPPRPP NPRRLRSYKD LDAPDDEVTL VDYRSL
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.