Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G119000.1 | Wheat | nucleus | 61.54 | 92.8 |
| HORVU6Hr1G021620.2 | Barley | nucleus | 60.74 | 85.61 |
| TraesCS6B01G147000.1 | Wheat | nucleus | 70.95 | 71.52 |
| Os02t0149600-01 | Rice | nucleus | 47.48 | 53.75 |
| TraesCS7D01G416100.1 | Wheat | nucleus | 48.54 | 52.29 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 3.32 | 51.02 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 36.74 | 47.27 |
| TraesCS7D01G252800.1 | Wheat | nucleus | 38.46 | 45.1 |
| KRH56284 | Soybean | endoplasmic reticulum | 42.57 | 44.96 |
| KRH62750 | Soybean | nucleus | 41.78 | 44.3 |
| Solyc01g009090.2.1 | Tomato | nucleus | 43.24 | 43.58 |
| KXG29470 | Sorghum | nucleus, plastid | 46.82 | 43.47 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 42.31 | 43.4 |
| Bra034322.1-P | Field mustard | nucleus | 39.52 | 43.06 |
| KRH44717 | Soybean | nucleus | 40.85 | 42.96 |
| AT2G27100.1 | Thale cress | nucleus | 40.58 | 42.5 |
| CDX77068 | Canola | nucleus | 38.86 | 42.46 |
| CDX71472 | Canola | nucleus | 39.52 | 42.39 |
| CDY04478 | Canola | nucleus | 39.66 | 42.11 |
| Bra012034.1-P | Field mustard | nucleus | 39.52 | 41.97 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 9.55 | 37.31 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G108900.1 | EnsemblPlantsGene:TraesCS6D01G108900 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:Arsenite-R_2 |
| InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 | PFAM:PF04959 |
| PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | MapMan:15.5.15 | MapMan:16.10.2.1.3 | : |
Description
No Description!
Coordinates
chr6D:+:73519641..73524774
Molecular Weight (calculated)
82646.6 Da
IEP (calculated)
10.046
GRAVY (calculated)
-0.857
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MWPTWDVPRS PGDQPVRPLL AAPPGDRHAR PGPARSWADE ADAADDDPPL PPPPPLGSSR PVRLVDALAS RSEDPAQAQA QALPPPPPLG SSRPERVAGY
101: RMDADSPRSD GRSSSPGGGQ GARRRSRSPR QRGKPSPERV HVPLPPPPPV GSSRPVRVTY RLESDSSRSS RSSSPAEIMG PPRRRSPSRS NDGKRRRSSP
201: PRRSPSPDPP KRPRRDDGAG RRSPPRGGRY ERGGDGGKLA GHRAPDGPNS GYGASSKVQD ITQRKGLMTY KQFILALEDD VSPAEAESRY HEYKTAYITT
301: QKHAYFDLHK GDTRLKEKYH PTSLLSVIER RNEFCKAAAK SLILDLRSGT LDLGPGMTAD GSSKSGNVNY GSSGNGEDYG NKRRKNGRGP PKEPGPLSTA
401: PKAHPVSSKY RRVQADIDQT LALVRKLDTE KGIVGNILSI GGDHGKPDDD RSHVGSAGPL VIIRGLTTVK GLEGVELLDT LLTYLWRVHG VDYYGMSERR
501: NANGFRHVRA DNKIADGFNI SAADWEKKLD SFWHERLVNG DDPLVVLTAK DKIDAATVEA LAPYVKKIMD ENYGYKYGCG AMGCAKVFHA PEFVHKHLKL
601: KHPDLVSVLT LNVQDDIYFQ NYMNDPNAPG GKPVMQQSEQ DSGRMRRIPD EGAFDKQGSD APLIPDAPPT VLVPLPGAGP LGPFVPITPD MAVQMMREQR
701: PPRPNGAQRK KKPLMPEPMM PMYPHFPLDP RPLRRYNDLD APEEEVTAID YRSV
101: RMDADSPRSD GRSSSPGGGQ GARRRSRSPR QRGKPSPERV HVPLPPPPPV GSSRPVRVTY RLESDSSRSS RSSSPAEIMG PPRRRSPSRS NDGKRRRSSP
201: PRRSPSPDPP KRPRRDDGAG RRSPPRGGRY ERGGDGGKLA GHRAPDGPNS GYGASSKVQD ITQRKGLMTY KQFILALEDD VSPAEAESRY HEYKTAYITT
301: QKHAYFDLHK GDTRLKEKYH PTSLLSVIER RNEFCKAAAK SLILDLRSGT LDLGPGMTAD GSSKSGNVNY GSSGNGEDYG NKRRKNGRGP PKEPGPLSTA
401: PKAHPVSSKY RRVQADIDQT LALVRKLDTE KGIVGNILSI GGDHGKPDDD RSHVGSAGPL VIIRGLTTVK GLEGVELLDT LLTYLWRVHG VDYYGMSERR
501: NANGFRHVRA DNKIADGFNI SAADWEKKLD SFWHERLVNG DDPLVVLTAK DKIDAATVEA LAPYVKKIMD ENYGYKYGCG AMGCAKVFHA PEFVHKHLKL
601: KHPDLVSVLT LNVQDDIYFQ NYMNDPNAPG GKPVMQQSEQ DSGRMRRIPD EGAFDKQGSD APLIPDAPPT VLVPLPGAGP LGPFVPITPD MAVQMMREQR
701: PPRPNGAQRK KKPLMPEPMM PMYPHFPLDP RPLRRYNDLD APEEEVTAID YRSV
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.